PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019970
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 618aa    MW: 67911.7 Da    PI: 7.7553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019970genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76e-11426225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 + e Cr+f+r G C+yGdrCkF H
  DCAR_019970  4 RKEACRNFQR-GSCQYGDRCKFLH 26
                 6899******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.737229IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5430IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7628IPR000571Zinc finger, CCCH-type
PfamPF157044.0E-70413596IPR031432MALE GAMETOPHYTE DEFECTIVE 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0005730Cellular Componentnucleolus
GO:0005753Cellular Componentmitochondrial proton-transporting ATP synthase complex
GO:0009507Cellular Componentchloroplast
GO:0005507Molecular Functioncopper ion binding
GO:0008270Molecular Functionzinc ion binding
GO:0050897Molecular Functioncobalt ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPPRKEACRN FQRGSCQYGD RCKFLHTTQQ QPKPNNAFGF GSQNASQFPR NNAQPQQPNP  60
FGFGVQNSSQ ARGANDFGSK QNQFKPFENK WSRSSSTTAA ASNAPQKSAN QPPAPEHKCT  120
DPESCKRQMK EDFEKEKPLW NLTCYGHVKN GPCDILGDIS YEELRALAYE DAKSGLSLQS  180
IVDKERNLLK AKLLEFDGLL RNSNTFPPRS TLDTNNQFPG PSPNVFPPAA QNSNPPAFSS  240
FSQLRMTPSA PVNAMAQTNP FQLNAPPSSV PGTVNITSES KGIFGSQFPT QPLGGSFPTV  300
AANISATGTV PERNTFPTSG IMPPVTNLAN SQSSIFSNGM NAASFAMTGS NASQSLMVEM  360
PKGNGGGDNS IWLKEEWFPG EVYTGPAILQ SEYAASVRLF ATAPPATKAT EGGARPPSKG  420
DELLKNIFLD VKNKFEKAMG VLRREKITID PEDQSAVAQY ANVMKTVREE AKLFSESQRI  480
EYTIASRTAG IEDARSHMLA LKEIRIKRGL TDELGAEAMM MDAVDKIEKQ LKKPLMKADK  540
EGMAMLLAEF EKINKKLGIS HEQLPKYEEE LELKIAKAQL EELKKDALEA METQAKREEF  600
KDEEMPEVKS LDIRNFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255666.10.0PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLA0A164X3R70.0A0A164X3R7_DAUCS; Uncharacterized protein
STRINGVIT_09s0070g00470.t011e-110(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.27e-66C3H family protein