PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019935
Common NameDcLSLP
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 400aa    MW: 45087.4 Da    PI: 7.2392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019935genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.22.5e-11613981373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal................ 81 
                  +++lL++cAe++s  d+  a++l++ ls ++sp gd+++Rl++ f +AL+ rl++    ++   + ++ s++n ++ +l  +                
  DCAR_019935   1 MRQLLISCAEHISRCDFYGAHRLINILSANSSPCGDSTERLVHQFSKALSLRLHS-FADTS---TITSGSTSNlVIPSLL-Tpkispalpssagsgsg 93 
                  589***************************************************9.22222...2222222222222222.13566678999999999 PP

         GRAS  82 .................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                     +++++P+++f+hltaNqaIle+veg++++Hi+Df+i++G+QWp+L+qa+a++  +pp+lRiTg g+    + + l++tg
  DCAR_019935  94 sstqqvfddesvvqsayLSLNQITPFIRFTHLTANQAILESVEGHHAIHILDFNIMHGVQWPPLMQAMAEK-FPPPMLRITGTGD----NLTILRRTG 186
                  9999999999999876444***************************************************8.899**********....99******* PP

         GRAS 163 erLakfAeelgvpfefnvlvakrledleleeL......rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                  +rLakfA++lg++f+f++++  + e+ +++++       ++p+E+laVn+vl lhrl       +++ + +L+++k l+P+v++++e+ea+hn + Fl
  DCAR_019935 187 DRLAKFAHTLGLRFQFHPVLLLENEESSISSFfasfaaYLQPDETLAVNCVLYLHRLS------RERLSLFLHQIKALNPRVLTLAEREANHNLPIFL 278
                  ******************977788888888776655556777***************8......334557**************************** PP

         GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                  +rf+eal++y+alfdslea+lp++s++ri vE+ ++grei +++a eg+ rrerhe+++ W+ +l+ +GF++++ls +a +qaklllr ++ s+gy++
  DCAR_019935 279 QRFVEALDHYTALFDSLEATLPPNSRQRIEVEQIWFGREIADIIASEGETRRERHERFRAWELMLRGSGFHNLALSPFALSQAKLLLRLHYpSEGYKL 376
                  ************************************************************************************************** PP

         GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                  +  ++s++lgW+++ L+svS+W
  DCAR_019935 377 HILNDSFFLGWQNQHLFSVSSW 398
                  ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.5061378IPR005202Transcription factor GRAS
PfamPF035148.6E-1141398IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MRQLLISCAE HISRCDFYGA HRLINILSAN SSPCGDSTER LVHQFSKALS LRLHSFADTS  60
TITSGSTSNL VIPSLLTPKI SPALPSSAGS GSGSSTQQVF DDESVVQSAY LSLNQITPFI  120
RFTHLTANQA ILESVEGHHA IHILDFNIMH GVQWPPLMQA MAEKFPPPML RITGTGDNLT  180
ILRRTGDRLA KFAHTLGLRF QFHPVLLLEN EESSISSFFA SFAAYLQPDE TLAVNCVLYL  240
HRLSRERLSL FLHQIKALNP RVLTLAEREA NHNLPIFLQR FVEALDHYTA LFDSLEATLP  300
PNSRQRIEVE QIWFGREIAD IIASEGETRR ERHERFRAWE LMLRGSGFHN LALSPFALSQ  360
AKLLLRLHYP SEGYKLHILN DSFFLGWQNQ HLFSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-54839826378Protein SCARECROW
5b3h_A9e-55839825377Protein SCARECROW
5b3h_D9e-55839825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1898440.0AB189844.1 Daucus carota DcLSLP mRNA for lateral suppressor-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257558.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-122SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A161ZZB90.0A0A161ZZB9_DAUCS; Uncharacterized protein
STRINGXP_009765072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-121GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]