PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019896

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 427aa MW: 48152.8 Da PI: 7.7036

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019896	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2e-54	41	177	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdee++++yL +kv ++++++ ++++evd+++ ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke++sk DCAR_019896 41 LPPGFRFHPTDEEIINHYLIRKVLNSNFTA-TAVAEVDLNRNEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYSKsrk 137 79***********************999.88***********99999*************************************9888 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek dWvmhe+rle DCAR_019896 138 gggpgsSKQLVGMKKTLVFYKGRAPKGEKLDWVMHEFRLE 177 8877766677*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-61	35	201	IPR003441	NAC domain
PROSITE profile	PS51005	58.45	41	201	IPR003441	NAC domain
Pfam	PF02365	1.8E-28	42	176	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEGGFHVMAD QGENCDISNN NGITAANTNS SGGRAMEQLD LPPGFRFHPT DEEIINHYLI 60 RKVLNSNFTA TAVAEVDLNR NEPWDLPKKA KMGEKEWYFF CQRDRKYPTG MRTNRATESG 120 YWKATGKDKE IYSKSRKGGG PGSSKQLVGM KKTLVFYKGR APKGEKLDWV MHEFRLEGNL 180 SSYNLPKLAK DEWVVCRVIH RNTAAALVKP SSMLDLTRMN SFVDSLLDSP SLPPLIDSPF 240 RKDEKPIASN FTNINNTTSS SVQHYNATSL AHYPKPTALA SDGNTIYYRQ PHMHPQNYNP 300 TSFNTSTNYY QMPVYSQNPY HNPSSATPGN LLHQKRPDHH LMPNFPGLGN FTNQIPGEWQ 360 CKVEQFSTNQ SMVSQSQDTG ISTDMTTDIS SSKQEENKGN IIRHFDDTED HSVICPLSDL 420 DSFWKY*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEGGFHVMAD QGENCDISNN NGITAANTNS SGGRAMEQLD LPPGFRFHPT DEEIINHYLI  60
RKVLNSNFTA TAVAEVDLNR NEPWDLPKKA KMGEKEWYFF CQRDRKYPTG MRTNRATESG  120
YWKATGKDKE IYSKSRKGGG PGSSKQLVGM KKTLVFYKGR APKGEKLDWV MHEFRLEGNL  180
SSYNLPKLAK DEWVVCRVIH RNTAAALVKP SSMLDLTRMN SFVDSLLDSP SLPPLIDSPF  240
RKDEKPIASN FTNINNTTSS SVQHYNATSL AHYPKPTALA SDGNTIYYRQ PHMHPQNYNP  300
TSFNTSTNYY QMPVYSQNPY HNPSSATPGN LLHQKRPDHH LMPNFPGLGN FTNQIPGEWQ  360
CKVEQFSTNQ SMVSQSQDTG ISTDMTTDIS SSKQEENKGN IIRHFDDTED HSVICPLSDL  420
DSFWKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	36	205	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	36	205	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	36	205	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	36	205	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	4e-53	36	205	15	172	NAC domain-containing protein 19
3swm_B	4e-53	36	205	15	172	NAC domain-containing protein 19
3swm_C	4e-53	36	205	15	172	NAC domain-containing protein 19
3swm_D	4e-53	36	205	15	172	NAC domain-containing protein 19
3swp_A	4e-53	36	205	15	172	NAC domain-containing protein 19
3swp_B	4e-53	36	205	15	172	NAC domain-containing protein 19
3swp_C	4e-53	36	205	15	172	NAC domain-containing protein 19
3swp_D	4e-53	36	205	15	172	NAC domain-containing protein 19
4dul_A	3e-53	36	205	12	169	NAC domain-containing protein 19
4dul_B	3e-53	36	205	12	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255861.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-98	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A161YHU8	0.0	A0A161YHU8_DAUCS; Uncharacterized protein
STRING	POPTR_0019s04710.1	1e-121	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	7e-91	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	DCAR_019896

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]