PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019886

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 384aa MW: 43184.3 Da PI: 7.2867

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019886	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl DCAR_019886 48 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-17	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-24	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-10	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-24	147	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MYHHRQQQHQ TNNLQPCSRM FMAPERRLFL QGGNVTRDSG LVLSTDAKPR LKWTPDLHER 60 FIEAVNQLGG ADKATPKSVL KLMGIQGLTL YHLKSHLQKY RLSKNIHGQA NTGSSKVGLV 120 AAEDLTPEAN ESHMLNSSIG THNKNPHISE AIQMQIEVQR QLHEQLEVQR HLQLRIEAQG 180 KYLQAVLEKA QDTITKQNLG ELGHEATKAR LSEPVSTAYN RCLNSTNHVQ SSCEQQKQSN 240 LEGSLDSCIT SSGGSLRNQD LNSNVMHSTN LVFAPMKSSK IDNDPRNQAF DAELQAIELS 300 MNIQRGKWYD DKSYNHEGLK ETNDGIGYTG KITKRTDSGK PENDDTMQES QLACFMPKLD 360 LNIHDENDAT LRCKQFDLNS FNW*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MYHHRQQQHQ TNNLQPCSRM FMAPERRLFL QGGNVTRDSG LVLSTDAKPR LKWTPDLHER  60
FIEAVNQLGG ADKATPKSVL KLMGIQGLTL YHLKSHLQKY RLSKNIHGQA NTGSSKVGLV  120
AAEDLTPEAN ESHMLNSSIG THNKNPHISE AIQMQIEVQR QLHEQLEVQR HLQLRIEAQG  180
KYLQAVLEKA QDTITKQNLG ELGHEATKAR LSEPVSTAYN RCLNSTNHVQ SSCEQQKQSN  240
LEGSLDSCIT SSGGSLRNQD LNSNVMHSTN LVFAPMKSSK IDNDPRNQAF DAELQAIELS  300
MNIQRGKWYD DKSYNHEGLK ETNDGIGYTG KITKRTDSGK PENDDTMQES QLACFMPKLD  360
LNIHDENDAT LRCKQFDLNS FNW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255488.1	0.0	PREDICTED: putative two-component response regulator ARR20 isoform X1
Swissprot	Q9SQQ9	1e-107	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A161YHV6	0.0	A0A161YHV6_DAUCS; Uncharacterized protein
STRING	XP_009630167.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-109	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_019886

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]