PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019849
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33887.1 Da    PI: 8.824
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019849genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-19154208256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  DCAR_019849 154 RKKLRLTKDQSAFLEDSFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 208
                  788899***********************************************98 PP
2HD-ZIP_I/II1284e-41154244192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+k+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  DCAR_019849 154 RKKLRLTKDQSAFLEDSFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 244
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.3E-16152214IPR001356Homeobox domain
SuperFamilySSF466891.21E-18152211IPR009057Homeodomain-like
PfamPF000461.6E-16154208IPR001356Homeobox domain
PROSITE profilePS5007116.665154210IPR001356Homeobox domain
CDDcd000867.64E-16154211No hitNo description
Gene3DG3DSA:1.10.10.602.4E-18154208IPR009057Homeodomain-like
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
SMARTSM003402.4E-25210253IPR003106Leucine zipper, homeobox-associated
PfamPF021836.0E-11210244IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELGLSLGET QKQPFRLFGK SNETVKKLDD GLGFCMGLAL SVSDEMTSKR VDRLTTDDHS  60
PSVELHLVPF STHHKPSHQL PFPWLSHNQI NLTSERINAE GGGTDSSSPD SSSFHMYRNR  120
RHNHKREDGH VETERDSNSR GGSDDEDNGL ILSRKKLRLT KDQSAFLEDS FKEHHTLNPK  180
QKQALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN RRLQKELQEL  240
RALKSSKPFY MQLPATTLTM CPSCERVAST TTVTATATKP RLHPFLQDQG HALHASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158SRKKLRL
2202210RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-42AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256946.10.0PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466652e-80HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A164X6X80.0A0A164X6X8_DAUCS; Uncharacterized protein
STRINGXP_006492845.18e-97(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-77homeobox from Arabidopsis thaliana