PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 44193.2 Da PI: 5.9404 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.7e-31 | 225 | 279 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LH+rFve+v++LGGsekAtPk+il+lm+ + Lt++hvkSHLQkYR+ DCAR_019840 225 KTRIRWSQDLHDRFVECVNRLGGSEKATPKAILRLMESDVLTIYHVKSHLQKYRI 279 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 224 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-15 | 224 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-23 | 225 | 280 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-7 | 229 | 278 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-19 | 310 | 355 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MKFQKVCFQE RIQQNHGLVD GFHFDHAKHF SQLNGVQTGI FVGGSQNIDD HANVASTIIS 60 HIGSPGSAFF ATERYMGLPY YDYQDNNPDL GPEIPKNFDD QIPRFQQSVG ENLYVDQSSV 120 EQVKTGFASS ESTAKPVSCP DDQYHNTVSE KSYSERDRIM QLKRKLFEDN YDPPDKRQAS 180 LTCDGDSSIS LSNNSYGYQL TNMGQSTGAN GNAVVPSGSA TISCKTRIRW SQDLHDRFVE 240 CVNRLGGSEK ATPKAILRLM ESDVLTIYHV KSHLQKYRIA KYMPDSAEGK SEKQTGMSDT 300 EQIGTKTGMY LKEALQMQLD VQKRLHEQLE IQRHLQLRIE EQGKQLKEMF DLQQQKTTGV 360 IESQKSSTET SPRDEPLITK IDGNLQCPVE ID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-21 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255606.1 | 0.0 | PREDICTED: uncharacterized protein LOC108225284 | ||||
TrEMBL | A0A164X764 | 0.0 | A0A164X764_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2491 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-64 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019840 |