PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019587

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 389aa MW: 42655.6 Da PI: 6.6586

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019587	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.3e-36	42	196	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.eaesssssa 82 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ++ +++ ++++ DCAR_019587 42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELpawtpttgsipiinppN----QDQsMHHQLQQQQ 135 79**************************************************************88888777776654431....1112233333333 PP TCP 83 snsssg................................kaaksaakskksqksaasalnla 111 ++++ + +a+++++++++ + + +++n++ DCAR_019587 136 QQQQLHlqqhppndnsssflpasmdsdsiadtiksffpMSASADTNTSNAANVQFHQHNFQ 196 3222223444555556666777777766666655554422222222222222222233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-32	42	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.295	44	102	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGDSSAQNQQ ITASRLGGLR KTSSSIGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID ELEELPAWTP TTGSIPIINP 120 PNQDQSMHHQ LQQQQQQQQL HLQQHPPNDN SSSFLPASMD SDSIADTIKS FFPMSASADT 180 NTSNAANVQF HQHNFQQHPR STSQNQDLRL SLQSLQDPML LHHQNQHEQT TGLFSGTHQM 240 SNFDGSGWSE PPSHDISRFS RMVSWNAGGD TGGSGVEGGA FVFNSPSSSM QMQQQQQALY 300 GQTQLLFSQR RPLQSSNTPS ICAWIDPSTY DHQAASSFPY QPSSMSGIGF ASAGEFSGFR 360 VPARIQGEEE EHDRVSDKPS SASSDSPQ*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGDSSAQNQQ ITASRLGGLR KTSSSIGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID ELEELPAWTP TTGSIPIINP  120
PNQDQSMHHQ LQQQQQQQQL HLQQHPPNDN SSSFLPASMD SDSIADTIKS FFPMSASADT  180
NTSNAANVQF HQHNFQQHPR STSQNQDLRL SLQSLQDPML LHHQNQHEQT TGLFSGTHQM  240
SNFDGSGWSE PPSHDISRFS RMVSWNAGGD TGGSGVEGGA FVFNSPSSSM QMQQQQQALY  300
GQTQLLFSQR RPLQSSNTPS ICAWIDPSTY DHQAASSFPY QPSSMSGIGF ASAGEFSGFR  360
VPARIQGEEE EHDRVSDKPS SASSDSPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	9e-20	49	102	1	54	Putative transcription factor PCF6
5zkt_B	9e-20	49	102	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00009	PBM	Transfer from 929286	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017253569.1	0.0	PREDICTED: transcription factor TCP4
Swissprot	Q9MAH8	3e-97	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A164ZSN1	0.0	A0A164ZSN1_DAUCS; Uncharacterized protein
STRING	XP_009785152.1	1e-124	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	5e-79	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	DCAR_019587

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]