PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019472
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 237aa    MW: 26343.2 Da    PI: 7.9467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019472genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-184085147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G ++W++I++++  gR++k+c++rw + 
      DCAR_019472 40 KGPWSAEEDRILTRLVERFGARNWSLISKYIK-GRSGKSCRLRWCNQ 85
                     79*****************************9.***********985 PP
2Myb_DNA-binding58.21.9e-1894136347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      DCAR_019472  94 PFSQDEDETILAAHQKYGNR-WATIARLLP-GRTDNAVKNHWNST 136
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.8053590IPR017930Myb domain
SuperFamilySSF466895.88E-3237133IPR009057Homeodomain-like
SMARTSM007174.3E-163988IPR001005SANT/Myb domain
PfamPF002491.9E-174085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-254193IPR009057Homeodomain-like
CDDcd001673.70E-154284No hitNo description
SMARTSM007174.5E-1691139IPR001005SANT/Myb domain
PROSITE profilePS512942291141IPR017930Myb domain
CDDcd001675.17E-1394137No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2494140IPR009057Homeodomain-like
PfamPF002492.4E-1594136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDYPGSLCLS TNTSSDSSSS DSSLNGAKAP RDVNKPEKIK GPWSAEEDRI LTRLVERFGA  60
RNWSLISKYI KGRSGKSCRL RWCNQLSPDV QHRPFSQDED ETILAAHQKY GNRWATIARL  120
LPGRTDNAVK NHWNSTLKRR QLDSVQTRFN ENETNDVQIN RGDSKCGVSG SLDMNVGPDE  180
IDPMTTLTLA PPGMGSGSDR GGENGPEVFW DVMRNVIARE VRDYVTTSFQ EGSGYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-42361403107B-MYB
1h88_C1e-413614054158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-413614054158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251414.11e-172PREDICTED: myb-related protein B-like
TrEMBLA0A162A6R01e-175A0A162A6R0_DAUCS; Uncharacterized protein
STRINGEMJ250269e-92(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-56myb domain protein 73