PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16295.1 Da PI: 10.7209 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.5e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g DCAR_019428 27 IYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 76 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.29E-29 | 26 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.9E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-12 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-12 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MEGSTDCCSS NLDDKRKHSK HQENTKIYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP 60 VAAARAYDTA VFYLRGPSAR LNFPELITDE PGDQLHDLSA ASIKKKLLRL ELGLTLFRPL 120 IMVLMILRMF RIRVGFITNL T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 26 | 84 | 4 | 63 | ATERF1 |
3gcc_A | 4e-15 | 26 | 84 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819909.1 | 2e-50 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q9FH94 | 6e-39 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A164ZNW6 | 1e-100 | A0A164ZNW6_DAUCS; Uncharacterized protein | ||||
STRING | XP_008393783.1 | 7e-48 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-41 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019428 |
Publications ? help Back to Top | |||
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