PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | AP2 | ||||||||
Protein Properties | Length: 577aa MW: 64099.8 Da PI: 7.257 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.9 | 1.8e-11 | 245 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g++ k + g ++ +e+Aa+a++ a++k++g DCAR_019345 245 SQYRGVTRHRWTGRYEAHLWDnSCQkEGQTrKGRQ-GGYDMEEKAARAYDCAALKYWG 301 78*******************66665554425555.77******************98 PP | |||||||
2 | AP2 | 45.9 | 1.4e-14 | 346 | 395 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g DCAR_019345 346 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.79E-18 | 245 | 309 | No hit | No description |
Pfam | PF00847 | 9.4E-9 | 245 | 301 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-14 | 245 | 310 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.963 | 246 | 309 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-21 | 246 | 315 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-12 | 246 | 310 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 247 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.78E-25 | 344 | 405 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-17 | 344 | 404 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-34 | 345 | 409 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.085 | 345 | 403 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 345 | 403 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-9 | 346 | 395 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 385 | 405 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MKRKINNGNN NTSSPNWLGF SLSPHMKMKE TEHNHHHFTT SLSSTVSTSF YGSSPSTYAQ 60 NGAFHSHLPV MPLKSDGSLC IIPPFSTSQS LQGGASQNRE SKALSLDSVY YHQNAADQEA 120 QRQQQQQEMQ YYSGMHCHQL YQTASMQEAR DSQGGDIFSE IFPGQEMNTG TMVHNDGSVV 180 AASGSVGSMG FGDLQCLSLS ISPGSQSSSI TTQAEISPAK KKGSAKMGSK QLKTKTIDTF 240 GKRTSQYRGV TRHRWTGRYE AHLWDNSCQK EGQTRKGRQG GYDMEEKAAR AYDCAALKYW 300 GSQTHINFPL ESYQQQLEDM KSMSRQEYVA NLRRKSSGFS RGASMYRGVT RHHQHGRWQA 360 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVSAVT NFDITRYDVE KIMASDAILA 420 GEQARRLNDS ETTNHTGIVE YINPLLVPSS QGEFFQSANH KNASSSDWKM VMHQSSQQHE 480 QNPNCLESLA EQNTSVEQEQ QQQHYKNLSF SMALQDLISI EAMNSTQQMF DDSLTSTKID 540 NSNHFSEPSS LVTSLSSSRE ASPENFAVIT ASMLFC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017250063.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-129 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A164ZLU4 | 0.0 | A0A164ZLU4_DAUCS; Uncharacterized protein | ||||
STRING | EOY15653 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-111 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019345 |