PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 483aa MW: 53366.4 Da PI: 6.1913 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+++vk+ G g+W+++ + g+ R++k+c++rw ++l DCAR_019270 25 KGPWTAAEDAVLLEYVKRQGEGNWNAVQKNSGLQRCGKSCRLRWANHL 72 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++ ++d++ + G++ W++ a+ ++ gRt++++k++w++ DCAR_019270 78 KGPFTPDEEKTIIDLHSKIGNK-WARMAAQLP-GRTDNEIKNYWNT 121 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.104 | 20 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-12 | 24 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-29 | 24 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-13 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-9 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 23.628 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 78 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-10 | 80 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 80 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MVSQGGRCGI SNSEGGVGHH VVLKKGPWTA AEDAVLLEYV KRQGEGNWNA VQKNSGLQRC 60 GKSCRLRWAN HLRPFLKKGP FTPDEEKTII DLHSKIGNKW ARMAAQLPGR TDNEIKNYWN 120 TRLKRRQRAG LPVYPMDLLQ QQYNQQHQQP PNISVSPSSS FASIISAAAA ASPSASHPTF 180 HRRLNQNSIN LMKNCTPLDL LNHPTYCNNM TGTKSIPFLS RGLINNHPFS FQNSVLLNQS 240 FSGKSLLFDA NLGHNSSPIP LPVTATNTTN SFDLMRLSGM GTDNNELSSI QNTIQTSNNS 300 GYMESDDVMG GASSGGDEQC DKIARGNSGL LGDLLQESQA IKRCEDSEDK DINGEEDGLS 360 KDAFQDFKNC NIDLMSNVPK HISHSGLSIS DRSNIGMNHE KAEVAEEMNI MDDDLMRLLD 420 CPSPVCIPDW YDVGSSTNTS NYSSREPSNV TPTYFSNVKK DEDDDWDENF CCWNNMPRVL 480 NS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 23 | 126 | 5 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017252068.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A164ZJY9 | 0.0 | A0A164ZJY9_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 7e-68 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019270 |