PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 483aa    MW: 53366.4 Da    PI: 6.1913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019270genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-142572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+++vk+ G g+W+++ +  g+ R++k+c++rw ++l
      DCAR_019270 25 KGPWTAAEDAVLLEYVKRQGEGNWNAVQKNSGLQRCGKSCRLRWANHL 72
                     79******************************************9986 PP

2Myb_DNA-binding48.52e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E++ ++d++ + G++ W++ a+ ++ gRt++++k++w++
      DCAR_019270  78 KGPFTPDEEKTIIDLHSKIGNK-WARMAAQLP-GRTDNEIKNYWNT 121
                      79********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1042072IPR017930Myb domain
SMARTSM007177.6E-122474IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-2924119IPR009057Homeodomain-like
PfamPF002495.8E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-222679IPR009057Homeodomain-like
CDDcd001672.01E-92772No hitNo description
PROSITE profilePS5129423.62873127IPR017930Myb domain
SMARTSM007171.1E-1477125IPR001005SANT/Myb domain
PfamPF002492.4E-1478121IPR001005SANT/Myb domain
CDDcd001673.66E-1080123No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2480126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVSQGGRCGI SNSEGGVGHH VVLKKGPWTA AEDAVLLEYV KRQGEGNWNA VQKNSGLQRC  60
GKSCRLRWAN HLRPFLKKGP FTPDEEKTII DLHSKIGNKW ARMAAQLPGR TDNEIKNYWN  120
TRLKRRQRAG LPVYPMDLLQ QQYNQQHQQP PNISVSPSSS FASIISAAAA ASPSASHPTF  180
HRRLNQNSIN LMKNCTPLDL LNHPTYCNNM TGTKSIPFLS RGLINNHPFS FQNSVLLNQS  240
FSGKSLLFDA NLGHNSSPIP LPVTATNTTN SFDLMRLSGM GTDNNELSSI QNTIQTSNNS  300
GYMESDDVMG GASSGGDEQC DKIARGNSGL LGDLLQESQA IKRCEDSEDK DINGEEDGLS  360
KDAFQDFKNC NIDLMSNVPK HISHSGLSIS DRSNIGMNHE KAEVAEEMNI MDDDLMRLLD  420
CPSPVCIPDW YDVGSSTNTS NYSSREPSNV TPTYFSNVKK DEDDDWDENF CCWNNMPRVL  480
NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28231265107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252068.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A164ZJY90.0A0A164ZJY9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.27e-68myb domain protein 101