PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019168
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 274aa    MW: 31267.8 Da    PI: 6.3124
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019168genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-102883657
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +++++q+ +Le+lF ++++ps+++r  + ++     +L+ +q+ vWF  rR+ ekk
  DCAR_019168 28 QYSADQVSVLEQLFVECQKPSHDMRIAMIRENavlsNLDSQQIHVWFETRRIVEKK 83
                 5899*******************9998877777889***************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.4E-42388IPR001356Homeobox domain
SuperFamilySSF466891.84E-92693IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-102884IPR009057Homeodomain-like
PfamPF000465.6E-82883IPR001356Homeobox domain
CDDcd000861.51E-72985No hitNo description
PROSITE profilePS5007111.7422984IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEMQGDHGFG NYSTCNGEIQ EIWDKVMQYS ADQVSVLEQL FVECQKPSHD MRIAMIRENA  60
VLSNLDSQQI HVWFETRRIV EKKKKIACEF NLLNEQMAAI GRLLLLENHS LHGMVQELLR  120
EKKYLNKLLE YASLESFPAL EVQRSDSKSV KISAEKWLLL LKHDYLRCEV QQLHKEKEYI  180
LKLLENVSNS ESIVNSYLSW PAAARTSNGN SSVPSTQDIG TINKKCNGWL LQDIKLVLQG  240
SEESPTAVVP AFLTQGFHVL VGRYSALEAW SYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249338.11e-158PREDICTED: homeobox-leucine zipper protein HOX32-like isoform X2
TrEMBLA0A164ZHC30.0A0A164ZHC3_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.28e-20HD-ZIP family protein