PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019137
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 490aa    MW: 54145.1 Da    PI: 5.5304
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019137genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB142.51.1e-44366451194
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  vreqdrflPian+srimkk+lPan+ki+kdak+tvqecvs        easdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre +
  DCAR_019137 366 VREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVS--------EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLARYREGD 451
                  59************************************97........6******************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF567521.12E-242070IPR001544Aminotransferase class IV
PfamPF010631.1E-1731302IPR001544Aminotransferase class IV
SuperFamilySSF567521.12E-24111304IPR001544Aminotransferase class IV
Gene3DG3DSA:3.20.10.107.8E-25165340No hitNo description
Gene3DG3DSA:1.10.20.105.6E-41361467IPR009072Histone-fold
SuperFamilySSF471131.58E-30369458IPR009072Histone-fold
PfamPF008081.8E-17372428IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-9411429No hitNo description
PRINTSPR006153.1E-9430448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSNLDFLFVN GVVSPPSLTP SVATLLETHP GAYTTSRTHN NGSVLLFWER HLNRLANSAR  60
ILLNSKPELL FEIGESRASF SGKFSNWDSA MKSLVNDLMR TALPVAVEDM KVGEELAVTT  120
LVSGNMENWR RNEGLDGEEM FREVFDVYIR VGLYVPLEFG LRENGAHLAA VGPGRAVANA  180
KYSEWVRVRK HLEKLRPPSA TELILSNDGD HMLEGCLTNF FVVCLRDGSE DDAKAEEDLT  240
VYEVQTAPIS DGVLPGVIRQ IIIEACLKHG IPFREVAPSW SRHEQWEEAF ITNSLRLLQH  300
VETIRVPCSW SSLESKSWKD VNWEEKQFKE GPGTITSVLQ VMADGSSSPA GGSHESGGDQ  360
SPRSNVREQD RFLPIANISR IMKKALPANG KIAKDAKDTV QECVSEASDK CQKEKRKTIN  420
GDDLLWAMAT LGFEDYIDPL KAYLARYREG DTKGSARGGE GSAKKDPIGS QLSSQQYAHQ  480
GMGYVNSQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-34367449494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-34367449494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250017.10.0PREDICTED: uncharacterized protein LOC108220690
TrEMBLA0A164ZGJ40.0A0A164ZGJ4_DAUCS; Uncharacterized protein
STRINGLus100403660.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.37e-67nuclear factor Y, subunit B8