PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019112
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 171aa    MW: 18945.6 Da    PI: 9.1936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019112genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-16653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + rWT++Ed  lv +++++G  +W++++   g++R++k+c+ rw ++l
      DCAR_019112  6 KSRWTPDEDIMLVSYIQEHGASNWSLVPGNAGLNRSGKSCRFRWMNHL 53
                     68********************************************97 PP
2Myb_DNA-binding49.69.2e-1659104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+++++++ ++lG++ W+ Ia++++ gRt++ +k++w+++l
      DCAR_019112  59 RGKFTHHEEQIIIHYQALLGNR-WADIAAHLP-GRTDNGVKNYWHTHL 104
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.519153IPR017930Myb domain
SuperFamilySSF466892.17E-283100IPR009057Homeodomain-like
SMARTSM007175.2E-12555IPR001005SANT/Myb domain
PfamPF002491.4E-14653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-22860IPR009057Homeodomain-like
CDDcd001672.21E-11853No hitNo description
PROSITE profilePS5129424.96254108IPR017930Myb domain
SMARTSM007172.2E-1358106IPR001005SANT/Myb domain
PfamPF002497.7E-1459104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2461108IPR009057Homeodomain-like
CDDcd001677.51E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MARLPKSRWT PDEDIMLVSY IQEHGASNWS LVPGNAGLNR SGKSCRFRWM NHLRPGINRG  60
KFTHHEEQII IHYQALLGNR WADIAAHLPG RTDNGVKNYW HTHLKKKLDI VNGHVDEAMG  120
DPIAAPVYQV SPIMVTVPAP NFAPGCEGFD YPSIARAPSF APAPNACTRT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2841095109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245833.11e-70PREDICTED: transcription factor MYB30-like
SwissprotQ9SN784e-50MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A162A5Y61e-125A0A162A5Y6_DAUCS; Uncharacterized protein
STRINGXP_010546059.17e-51(Tarenaya hassleriana)
STRINGGSMUA_Achr7P21010_0015e-51(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-52myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]