PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23108.5 Da PI: 10.0118 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 7e-16 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + rWT +Ed lv +v+++G +W++++ g++R++k+c+ rw ++l DCAR_019111 6 KSRWTLDEDIMLVSYVQEHGASNWSLVPGNAGLNRSGKSCRFRWMNHL 53 68********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.5e-14 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E+++++++ ++lG++ W+ Ia+++ gRt++ +k++w+++l DCAR_019111 59 RGKFTHHEEQIIIHYQALLGNR-WANIAAHLT-GRTDNGVKNYWHTHL 104 89********************.********9.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.112 | 1 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.38E-28 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-10 | 8 | 53 | No hit | No description |
PROSITE profile | PS51294 | 23.654 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MARLPKSRWT LDEDIMLVSY VQEHGASNWS LVPGNAGLNR SGKSCRFRWM NHLRPGINRG 60 KFTHHEEQII IHYQALLGNR WANIAAHLTG RTDNGVKNYW HTHLKKKLDI VNGHVYEPIG 120 NPVAAPALVY QVLPVPAPAL VYRVPPVPAS SFAPGREGFD YPSIARAPSF GPGREGFAYL 180 PIALAPSFAP GRVVFAYPPD IFISAGHES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 4 | 109 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245833.1 | 4e-77 | PREDICTED: transcription factor MYB30-like | ||||
Swissprot | Q9SCU7 | 8e-47 | MYB30_ARATH; Transcription factor MYB30 | ||||
TrEMBL | A0A164ZFV2 | 1e-152 | A0A164ZFV2_DAUCS; Uncharacterized protein | ||||
STRING | XP_010532312.1 | 7e-47 | (Tarenaya hassleriana) | ||||
STRING | XP_010546059.1 | 7e-47 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 4e-49 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019111 |