PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Whirly | ||||||||
Protein Properties | Length: 101aa MW: 10984.6 Da PI: 8.5095 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 139.7 | 1.3e-43 | 1 | 99 | 35 | 139 |
Whirly 35 llelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefa 132 +l + +a++erkydWekkq fals+te+++l++l++ e+ceffhdp++k+sn+G+vrk+l+v+P++dGsG+ n ++k e+++vPv+kaefa DCAR_019109 1 MLSFSPAIGERKYDWEKKQLFALSPTEIGSLISLGPDEACEFFHDPSMKTSNAGQVRKTLQVKPHADGSGVVNN------VQKISERVTVPVTKAEFA 92 799*******************************************************************7544......467789************ PP Whirly 133 vlrsllv 139 v+r++++ DCAR_019109 93 VMRTAFS 99 ****995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 3.0E-39 | 1 | 97 | IPR013742 | Plant transcription factor |
SuperFamily | SSF54447 | 3.53E-35 | 1 | 99 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 1.6E-39 | 1 | 99 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MLSFSPAIGE RKYDWEKKQL FALSPTEIGS LISLGPDEAC EFFHDPSMKT SNAGQVRKTL 60 QVKPHADGSG VVNNVQKISE RVTVPVTKAE FAVMRTAFSV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-48 | 1 | 99 | 50 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-48 | 1 | 99 | 50 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-48 | 1 | 99 | 50 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-48 | 1 | 99 | 50 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017249281.1 | 2e-65 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1 | ||||
Swissprot | Q8VYF7 | 2e-47 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A164ZFT7 | 1e-68 | A0A164ZFT7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009366880.1 | 5e-48 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 9e-50 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019109 |