PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019076
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 401aa    MW: 45019.5 Da    PI: 5.2616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019076genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.2e-52251521128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L   +++++++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + k
  DCAR_019076  25 LAPGFRFHPTDEELVRYYLTRKACGKPFRF-QAVSEIDVYKSEPWELAgySSLSSRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRSVRH-K 120
                  579*************************99.88**************85336666777**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  g+++g+kktLvf++grap+g++t+Wvmheyrl
  DCAR_019076 121 GQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 152
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-5921177IPR003441NAC domain
PROSITE profilePS5100557.69425177IPR003441NAC domain
PfamPF023654.7E-2827152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDPELSIAPA VHTPTVVPAS QPKCLAPGFR FHPTDEELVR YYLTRKACGK PFRFQAVSEI  60
DVYKSEPWEL AGYSSLSSRD LEWYFFSPVD RKYGNGSRLN RATGKGYWKA TGKDRSVRHK  120
GQTIGMKKTL VFHSGRAPDG KRTNWVMHEY RLSDIELQKS GVAQEKDAFV LCRIFEKSGL  180
GPPNGDRYAP FIEEEWEDDA ALLVPGGEAE EELANGDDVR IGASDFEKFI QDANKASHSP  240
SEIPMESLSI PFGCKRERTD DCPINGEAEL EPVQMFEIKR SKHSNPSSED STTTSHDLPA  300
GPSTNGTLLE FPLLDSIGNR ESHQSSITLT FDASNLEKSV PPGYLKFISN LENEILNVSM  360
ERETLKIEVM RAQAMINVLQ SRIEYLNKDN EEYRRMIQGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-522517720168NAC domain-containing protein 19
3swm_B1e-522517720168NAC domain-containing protein 19
3swm_C1e-522517720168NAC domain-containing protein 19
3swm_D1e-522517720168NAC domain-containing protein 19
3swp_A1e-522517720168NAC domain-containing protein 19
3swp_B1e-522517720168NAC domain-containing protein 19
3swp_C1e-522517720168NAC domain-containing protein 19
3swp_D1e-522517720168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252138.10.0PREDICTED: NAC domain-containing protein 78 isoform X1
TrEMBLA0A164ZF160.0A0A164ZF16_DAUCS; Uncharacterized protein
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-106NAC domain containing protein 52