PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 510aa MW: 56263.2 Da PI: 4.4281 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 93.9 | 2.5e-29 | 380 | 497 | 1 | 121 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+ v+++d + a + L+ ++++as +gd+ qRla f+++L+ar+a+++++ly+al++++ s +e+l+a++++ ++P+ k+s + a DCAR_018918 380 LRTLLISCAQSVAADDRKTAYEQLKLIRQHASASGDASQRLAVIFANGLEARMAGTGTQLYAALSSKRIS---AIEKLKAFQVYLSACPFTKISVFFA 474 6789************************************************************999999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisq 121 N++I++ +++++++HiiDf+i++ DCAR_018918 475 NNMIMDMASNASTLHIIDFGIQH 497 *********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.848 | 354 | 509 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.8E-27 | 380 | 497 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MVMDPGYNDT SGAINDFDFG DEMILPGFDQ STNIVNGFKL NDDYVDLSFL DIPDRPVEHR 60 PGYANNNSSS GSSEVNSPDE FSDGVLKFLN QILMEEKIDE KPSMFHDPLA LQEAEKSFYE 120 VLGKQYPQQT FQPPADIYQS VESVSDYFAG SSSEASTSSG NSVGNNHYEH SQWAGDSLDL 180 RSSIQHNQPS QYLSFSNMES RPERTVASEN SFNNNINGSM DYSMSTHVIS NIFNDKDSML 240 QFKKGMEEAS KFLPSIPQIV VNLDNYALPS DTKEGHPAVQ VKVEMDEISP SSSRGRKQYQ 300 RQDSLSEEDE RSSKQMAVYE EEVELSEMFD KVLLLGPSCG KEEPIEGSAV AHLDNVTTRG 360 AKGAKSRSVN IDNNTESVDL RTLLISCAQS VAADDRKTAY EQLKLIRQHA SASGDASQRL 420 AVIFANGLEA RMAGTGTQLY AALSSKRISA IEKLKAFQVY LSACPFTKIS VFFANNMIMD 480 MASNASTLHI IDFGIQHNNL KPTSFVNPD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-11 | 387 | 505 | 25 | 146 | Protein SCARECROW |
5b3h_D | 6e-11 | 387 | 505 | 25 | 146 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017253161.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | A0A161XV66 | 0.0 | A0A161XV66_DAUCS; Uncharacterized protein | ||||
STRING | XP_009606498.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 4e-93 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018918 |