PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018882
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 241aa    MW: 27665.1 Da    PI: 7.5404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018882genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed  lv +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
      DCAR_018882  6 KGPWTEQEDVHLVLYVNLYGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 53
                     79********************************************97 PP
2Myb_DNA-binding48.32.4e-1560104248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+++  E+ l +++++++G++ W++Iar+++ gRt++++k++w++y+
      DCAR_018882  60 GKMSCHEERLVLELHNKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 104
                      567778***************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.696157IPR017930Myb domain
SuperFamilySSF466895.99E-294100IPR009057Homeodomain-like
SMARTSM007178.1E-14555IPR001005SANT/Myb domain
PfamPF002495.2E-15653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-19760IPR009057Homeodomain-like
CDDcd001678.11E-10853No hitNo description
PROSITE profilePS5129418.39958108IPR017930Myb domain
SMARTSM007171.0E-1358106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2161107IPR009057Homeodomain-like
PfamPF002492.6E-1361103IPR001005SANT/Myb domain
CDDcd001671.36E-1066104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEEMRKGPWT EQEDVHLVLY VNLYGDRRWD FIAKVSGLKR TGKSCRLRWV NYLHPGLKHG  60
KMSCHEERLV LELHNKWGNR WSRIARKLPG RTDNEIKNYW RTYMRKKGQE KKRANLSSPS  120
TSVSYNSSYS SSCTVNSMKI KDTNERNFFD TGGVAAKGLV SDAEEIKKGD YSMDEIWNDI  180
VSSDDDAITP VFSALASPIW DYCPDSLWIT DQEKDTNMTV PTSEPFHSLF GQEDIAFFAG  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2731071104MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-27310724127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249666.11e-131PREDICTED: transcription factor MYB48-like
RefseqXP_017249667.11e-131PREDICTED: transcription factor MYB48-like
SwissprotQ4JL841e-74MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A162A5E71e-180A0A162A5E7_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04140.t013e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-75myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]