PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 406aa MW: 44059.8 Da PI: 6.754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3e-18 | 43 | 93 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a++ a+++l+g+ DCAR_018870 43 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 93 689******.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-29 | 43 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 43 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 43 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-34 | 43 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-17 | 43 | 101 | No hit | No description |
PRINTS | PR00367 | 1.4E-7 | 44 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 44 | 101 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-7 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MAHDSASGSG SKAAGGGGMG QPSNGPEGLR GRKKSATSRG HHRFVGVRQR PSGRWVAEIK 60 DSLQKVRLWL GTFDTAEDAA RAYDDAARAL RGANARTNFE HPQSLARNSL PEHAEPFSFE 120 QACGKHEAEE GLLGALKAKL YDGNNLRSLI CPQLNSTTSL PALQQQQQSS HAVAVSQQKN 180 HVAKRDHQSM SAPFVGTPAK ATANIGSSLN QLMLPSGFEQ SHKQIDNSFL PNGPIDFMAI 240 HEQQFGGMKW QNQGTDITSA MVWQQQSNYM PWQAASDLNM HIPQDQNAFF GDSPTLPWQF 300 SGASTQSAMI DQHMSHYTDS NYFNNQLLNG NKMNGKMDMM SEYIPVTYGV ADQVVNEAEL 360 TVCGGVSTIW SPDQQFTTGW ATNGNGGVNV SNNWEQLLYA SSVLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 41 | 106 | 12 | 78 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A164ZAS7 | 0.0 | A0A164ZAS7_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-15 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018870 |