PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018826
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 540aa    MW: 60158.7 Da    PI: 6.8866
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018826genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24162263199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW +Fv++++L +gD v+F   + +++e
  DCAR_018826 162 FCKTLTASDTSTHGGFSVPRRAAEDCfapldytQ--QRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWTNFVSQKNLVSGDAVLFL--RGENGE 255
                  99****************************9743..345679************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  DCAR_018826 256 LRLGIRRT 263
                  9****996 PP
2Auxin_resp105.65.6e-35288369182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+st+s+F+v+YnPras+++Fvv++++++k++ +++ +G Rfk +f ++dsserr+ G+v g++dldp++WpnSkWr+L
  DCAR_018826 288 VANAISTNSPFHVFYNPRASHAKFVVSYQDYVKSIASQIPIGARFKKKFVKDDSSERRFGGVVYGIQDLDPYKWPNSKWRCL 369
                  689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-42154275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-40156274IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-23160262No hitNo description
PROSITE profilePS5086313.578162264IPR003340B3 DNA binding domain
SMARTSM010192.9E-23162264IPR003340B3 DNA binding domain
PfamPF023621.8E-22162263IPR003340B3 DNA binding domain
PfamPF065075.4E-29288369IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDIDLNHVVS EVEEAAVCCL SSLTSLSSST ISTTMTDGGA AAAPMFMELW HACAGPLITL  60
PKRGDLVVYF PQGHLEQAAS DLSFPHIEAS NFGLSPQIFC KIMDVQLLAN KDNDEVYTQL  120
TLLQVPEPEF PATNSDEKQN EYLGLDNEER GATPTKTTPH MFCKTLTASD TSTHGGFSVP  180
RRAAEDCFAP LDYTQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WTNFVSQKNL  240
VSGDAVLFLR GENGELRLGI RRTVRPRNEL PDSVLGNQKS YHTVLSSVAN AISTNSPFHV  300
FYNPRASHAK FVVSYQDYVK SIASQIPIGA RFKKKFVKDD SSERRFGGVV YGIQDLDPYK  360
WPNSKWRCLL LSAWGKAIGY DVLDMHQRSK TNFYPLASEG TRNIYFPHND AHKAVDNYNM  420
GAYTNYANEN VLLNPYCHQT GVTNHEAEKL NSSKEPRSEC IISSSPKYKA NSKIEKDGSL  480
QSTVTDCKLF GFSLTGETST ANSQFSCKRI CTKIHIYTQE EVAKMMGGMI SDDTPEALQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1093836912331Auxin response factor 1
4ldy_B1e-1093836912331Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248730.10.0PREDICTED: auxin response factor 4-like
SwissprotQ9ZTX91e-157ARFD_ARATH; Auxin response factor 4
TrEMBLA0A164Z9W30.0A0A164Z9W3_DAUCS; Auxin response factor
STRINGXP_008225336.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-159auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]