PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_018822

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 416aa MW: 46090.9 Da PI: 8.5348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_018822	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H DCAR_018822 63 FMCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	11.6	0.00084	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + DCAR_018822 139 WKCDKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.05E-7	62	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	63	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	63	85	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	5.1E-5	63	85	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-4	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-7	134	159	No hit	No description
SMART	SM00355	150	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MMSPDGLSSS VEFVREPKPN SNPNGPTSKP SGKRKRNLAG TPEDPDAEVI ALSPKSLTAT 60 NRFMCEICNK GFQRDQNLQL HRRGHNLPWK LKQRANKELK KKVYLCPEES CVHHDPSRAL 120 GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCQC GTLFCRKDSF 180 ITHRAFCDAL TDESSKFNTP APPPTLNFSN ELINSSLQLN APQTPGDMTP LFPAMLGQDD 240 LATFDQLNGS TALSEIIQSS NTKARPLKAE ELESSNIKSL TNSMYYNKET SKSHLSATAL 300 LQKATTMGST RSHSAGMFAN GLVFMNSNTL DELLDSDNQM MDITESNHNI ESDLHGKLLS 360 CDKGNMTRDF LGVGGSNNNG SYNKYSRVLL QQEVGKLGSD MDTRQYSVTG TNGEE*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MMSPDGLSSS VEFVREPKPN SNPNGPTSKP SGKRKRNLAG TPEDPDAEVI ALSPKSLTAT  60
NRFMCEICNK GFQRDQNLQL HRRGHNLPWK LKQRANKELK KKVYLCPEES CVHHDPSRAL  120
GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCQC GTLFCRKDSF  180
ITHRAFCDAL TDESSKFNTP APPPTLNFSN ELINSSLQLN APQTPGDMTP LFPAMLGQDD  240
LATFDQLNGS TALSEIIQSS NTKARPLKAE ELESSNIKSL TNSMYYNKET SKSHLSATAL  300
LQKATTMGST RSHSAGMFAN GLVFMNSNTL DELLDSDNQM MDITESNHNI ESDLHGKLLS  360
CDKGNMTRDF LGVGGSNNNG SYNKYSRVLL QQEVGKLGSD MDTRQYSVTG TNGEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-33	135	199	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-33	135	199	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249251.1	0.0	PREDICTED: protein indeterminate-domain 9-like
Swissprot	Q9SCQ6	1e-110	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A162A586	0.0	A0A162A586_DAUCS; Uncharacterized protein
STRING	XP_009612448.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-97	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	DCAR_018822

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]