PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018803
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 705aa    MW: 78392.7 Da    PI: 8.2599
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018803genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24112213199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +++++ 
  DCAR_018803 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVARDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENGD 205
                  89****************************997556555..8************************************************..458899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  DCAR_018803 206 LCVGIRRA 213
                  9****997 PP
2Auxin_resp108.76e-36281364183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a ++++FevvY+P+a+t+eF+v+++++++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+
  DCAR_018803 281 AATLAMKGQPFEVVYYPSAGTPEFCVRASSLSAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPILWPNSPWRLLQ 364
                  6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-29103214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-37106217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-21111212No hitNo description
PROSITE profilePS5086313.183112214IPR003340B3 DNA binding domain
SMARTSM010193.6E-22112214IPR003340B3 DNA binding domain
PfamPF023622.8E-22112213IPR003340B3 DNA binding domain
PfamPF065071.1E-30281364IPR010525Auxin response factor
PROSITE profilePS5174516.67592672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MKEVEKGLDS QLWHACAGGM VQMPPVNSKI FYFPQGHAEH TLSHVSFGTL PRIPALILCR  60
VAAIKFMADT ETDEVYAAIR LIPIGQNEFD YNENNGVMES NGIESVEKSN SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVVARDVHGE IWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFMR TENGDLCVGI RRAKRGSLGS PETPTGWTSA SGNCPSPYGG  240
FSVYLMEDEN KRMRSSSNGN GNSSGGIKGK GKVRPESVIE AATLAMKGQP FEVVYYPSAG  300
TPEFCVRASS LSAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPILWPNSPW  360
RLLQVTWDEP ELLQNVKSVS PWLVELVSNM PVINMSPFSP PRKKSRLPHY PDFLHDDQFP  420
VSSFTGNPLR PSSPFYYLSD SITAGIQGAR QAQFGTPLSG LQVSNKVQMG LFPNSTKQLN  480
PQSKISNGTR PSSTHGTETV SCLLTMGHSN QNLEKTDTKK APIFILFGQP ILTEQQISHD  540
CSRDSVSQVS HGESPEKRKR PSHDNMDLSE KLTDSRFLWN QGFRKTEPEL ETGHCKVFLE  600
SEDVGRTLDL SVLESYEQLH ERLANMFRIE RSVAMTRVLY QDATGSVKQI GNEPFSEFRR  660
TAKRLTILMD SGLNTVGRIW NKIMPNADRR LDSSSQTGPL SIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-68738518353Auxin response factor 1
4ldw_A1e-68738518353Auxin response factor 1
4ldw_B1e-68738518353Auxin response factor 1
4ldx_A2e-68738518353Auxin response factor 1
4ldx_B2e-68738518353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253294.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A164Z9A80.0A0A164Z9A8_DAUCS; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]