PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 182aa MW: 20534.2 Da PI: 9.6346 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 29.7 | 1.5e-09 | 11 | 37 | 1 | 27 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekA 27 k+rl+Wt+e+He F +av+qLGG++k DCAR_018701 11 KERLKWTQEMHELFEKAVDQLGGPDKN 37 68**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 11 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.3E-17 | 57 | 101 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGSNRSGGVG KERLKWTQEM HELFEKAVDQ LGGPDKNKFK RSNSDILPNF SATVGAQLHE 60 ALQMQMGVQR RLSDQIEVQR NLKVKMEAQG RFLERIAEEH KSRPNINGKP RKSSSPVSLP 120 CLCKESESES DSDIQKSDIR SDEKFQGSKR AHFDQEDVLL RRHKNFAAGY CAQQCMFVPK 180 G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251064.1 | 1e-125 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A161YNN4 | 1e-132 | A0A161YNN4_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400059400 | 1e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-22 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018701 |