PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018576
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 382aa    MW: 43259.6 Da    PI: 5.0006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018576genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-19221270255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp+      kr +lg+++t+eeAa+ ++ a+ kl+g
  DCAR_018576 221 KYRGVRQRP-WGRYAAEIRDPV----MrKRLWLGTYDTPEEAAAVYDTAAIKLKG 270
                  8********.**********63....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-29220278IPR001471AP2/ERF domain
PROSITE profilePS5103223.538221278IPR001471AP2/ERF domain
PfamPF008471.6E-11221270IPR001471AP2/ERF domain
CDDcd000187.69E-31221278No hitNo description
SuperFamilySSF541718.5E-21221278IPR016177DNA-binding domain
SMARTSM003802.5E-36221284IPR001471AP2/ERF domain
PRINTSPR003673.6E-9222233IPR001471AP2/ERF domain
PRINTSPR003673.6E-9244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDSRNIIIDL IVPLQQTNLH SEFIQGHLCV KASNSETVNE LNDMQKYPPF PLHHAALTNN  60
DDPLVPEITR EYQLTMPNIK PQLNRDRSML YGGQVAESWL SFCLIQLCRD MGETEVVEFC  120
DRVISRTSKK HSSASQRRVL RIILIDADAT DCSSDEDYDH DYIVGNKRKR KRRVVKRQVS  180
EINFTPSASA TNNRRRREQQ EEEEVSDRSA PPPPPARPQR KYRGVRQRPW GRYAAEIRDP  240
VMRKRLWLGT YDTPEEAAAV YDTAAIKLKG PDAITNFPPP PDQVNTNISS PENKLVESAT  300
TPAAEPALPA GALSPTSVLP YNDDEDLATF GYGDVDAFGF QIEDQLVPFC LPDIMLSRTY  360
SRTRVDDPDF ADFDLLHDFL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18220278463ATERF1
3gcc_A1e-18220278463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172KRKRKRR
2167172RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252318.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A164Z4W70.0A0A164Z4W7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-33cytokinin response factor 4