PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018563
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 355aa    MW: 40080.6 Da    PI: 4.8404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018563genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-141563148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ v     + +W+ ++++ g+ R++k+c++rw +yl
      DCAR_018563 15 KGAWTAEEDKKLVNFVITNNYKcSWRDVPKHAGLLRCGKSCRLRWVNYL 63
                     79**************9999999**********99************97 PP
2Myb_DNA-binding46.49.3e-1571113347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        T+ E++l +d++ q+G++ W++Ia++m+ gRt++++k+ w+++
      DCAR_018563  71 LLTEHEEKLVIDLHCQFGNK-WSKIASHMP-GRTDNEIKNLWNTH 113
                      569*****************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-18665IPR009057Homeodomain-like
PROSITE profilePS5129410.7971063IPR017930Myb domain
SuperFamilySSF466895.62E-2512110IPR009057Homeodomain-like
SMARTSM007171.1E-71465IPR001005SANT/Myb domain
PfamPF002497.2E-131563IPR001005SANT/Myb domain
CDDcd001676.49E-71763No hitNo description
PROSITE profilePS5129422.52164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2366118IPR009057Homeodomain-like
SMARTSM007172.1E-1168116IPR001005SANT/Myb domain
PfamPF002493.8E-1272113IPR001005SANT/Myb domain
CDDcd001671.50E-973114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMGRRPCCDN TGLNKGAWTA EEDKKLVNFV ITNNYKCSWR DVPKHAGLLR CGKSCRLRWV  60
NYLSPDLKRG LLTEHEEKLV IDLHCQFGNK WSKIASHMPG RTDNEIKNLW NTHIKKKLSK  120
MGIDPLTHKP LNADPPPDNH HDHYQSQEAE LANGEETKEH HKDQQISLIL EGSTITHADD  180
QPAKEQELMG TKDGFIPNEN NDNAFSIYEV PLIEPYKNTE DGFPTHEVLL LEPNENIIDG  240
FSTPKVQFTE SEGTLPGHHL PSSCSSTACS NTSASTTISI STTNSILEDL KSLQSFEDWQ  300
SDGHRKICME NAGDAYEDDF IDWNWLINDF DIDTIDFELI KSLPDPITLQ NNLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231011822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251033.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A164Z4K40.0A0A164Z4K4_DAUCS; Uncharacterized protein
STRINGXP_004490820.18e-77(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-73myb domain protein 20