PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 416aa MW: 47676.4 Da PI: 4.335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ v + +W+ ++++ g+ R++k+c++rw +yl DCAR_018562 14 KGAWTAEEDKKLVNFVLTNYKCSWRDVPKHAGLLRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++l +d++ q+G++ W++Ia++m+ gRt++++k+ w+++ DCAR_018562 69 LLTQHEEKLVIDLHSQFGNK-WSKIASHMP-GRTDNEIKNLWNTH 111 569*****************.*********.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.204 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.002 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-13 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.14E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGRRPCCDNI GLNKGAWTAE EDKKLVNFVL TNYKCSWRDV PKHAGLLRCG KSCRLRWVNY 60 LRPDLKRGLL TQHEEKLVID LHSQFGNKWS KIASHMPGRT DNEIKNLWNT HIKKKLSKMG 120 IDPLTHKPLN AYPPPDNHHK HYQSQEAELP NGEETQEHHK DQEDEISLNL EESTITHTDD 180 QLAKEQELMD TNNGFLQQVP MNNEPDENND NAFSIYEVPI IEPYEPDENN DNAFSIYEIP 240 IIEPYKNTED GFSTHEVMLS ESNENTNNDF STHEVPLIKS NDNIDECFFS DAVPSIELEE 300 PDENTNNNFF IHEFQSIEPE ETLRPDLSSS CSSTTCSNTN ASTTISILED LKSLQSFEDW 360 QSGGHKKLYI ENSGVTCEDD FSDWNWLIND FDIDTIDFEL IRSLPDPVSL KNSLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-23 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251032.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | A0A162A4P6 | 0.0 | A0A162A4P6_DAUCS; Uncharacterized protein | ||||
STRING | Solyc11g011050.1.1 | 9e-81 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 2e-77 | myb domain protein 20 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018562 |