PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 416aa    MW: 47676.4 Da    PI: 4.335
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018562genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ v    + +W+ ++++ g+ R++k+c++rw +yl
      DCAR_018562 14 KGAWTAEEDKKLVNFVLTNYKCSWRDVPKHAGLLRCGKSCRLRWVNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding49.31.2e-1569111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        T+ E++l +d++ q+G++ W++Ia++m+ gRt++++k+ w+++
      DCAR_018562  69 LLTQHEEKLVIDLHSQFGNK-WSKIASHMP-GRTDNEIKNLWNTH 111
                      569*****************.*********.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-18563IPR009057Homeodomain-like
PROSITE profilePS5129411.204961IPR017930Myb domain
SuperFamilySSF466894.12E-2611108IPR009057Homeodomain-like
SMARTSM007171.7E-101363IPR001005SANT/Myb domain
PfamPF002493.7E-131461IPR001005SANT/Myb domain
CDDcd001673.22E-71661No hitNo description
PROSITE profilePS5129424.00262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2464116IPR009057Homeodomain-like
SMARTSM007175.8E-1366114IPR001005SANT/Myb domain
PfamPF002496.5E-1370111IPR001005SANT/Myb domain
CDDcd001677.14E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRRPCCDNI GLNKGAWTAE EDKKLVNFVL TNYKCSWRDV PKHAGLLRCG KSCRLRWVNY  60
LRPDLKRGLL TQHEEKLVID LHSQFGNKWS KIASHMPGRT DNEIKNLWNT HIKKKLSKMG  120
IDPLTHKPLN AYPPPDNHHK HYQSQEAELP NGEETQEHHK DQEDEISLNL EESTITHTDD  180
QLAKEQELMD TNNGFLQQVP MNNEPDENND NAFSIYEVPI IEPYEPDENN DNAFSIYEIP  240
IIEPYKNTED GFSTHEVMLS ESNENTNNDF STHEVPLIKS NDNIDECFFS DAVPSIELEE  300
PDENTNNNFF IHEFQSIEPE ETLRPDLSSS CSSTTCSNTN ASTTISILED LKSLQSFEDW  360
QSGGHKKLYI ENSGVTCEDD FSDWNWLIND FDIDTIDFEL IRSLPDPVSL KNSLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-23911622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251032.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A162A4P60.0A0A162A4P6_DAUCS; Uncharacterized protein
STRINGSolyc11g011050.1.19e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-77myb domain protein 20