PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018477
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 133aa    MW: 14597.3 Da    PI: 5.9734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018477genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-191970256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd +++g  +r +lg+f taeeAa+a+++a+ +++g+
  DCAR_018477 19 RYRGVRRRP-WGKFAAEIRDSTKQG--QRLWLGTFVTAEEAARAYDKAAYSMRGA 70
                 6********.**********55444..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-311979IPR001471AP2/ERF domain
SMARTSM003805.0E-341983IPR001471AP2/ERF domain
CDDcd000188.90E-291978No hitNo description
PROSITE profilePS5103223.4591977IPR001471AP2/ERF domain
PfamPF008477.3E-141969IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-221979IPR016177DNA-binding domain
PRINTSPR003676.4E-112031IPR001471AP2/ERF domain
PRINTSPR003676.4E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGDSRGGSKE LKEGKDEVRY RGVRRRPWGK FAAEIRDSTK QGQRLWLGTF VTAEEAARAY  60
DKAAYSMRGA LAVLNFPDEY PPTLCSSSAA ATVSSSAAAS SSGGRGKEVF EFECMDDQLL  120
EDLLQFDEYK KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-35141199114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251927.13e-93PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A164Z2R16e-92A0A164Z2R1_DAUCS; Uncharacterized protein
STRINGXP_010039174.12e-45(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]