PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26441.1 Da PI: 6.3794 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ +++yeA ar++dP+yG+v++i++lqqq+ +l+++la+l DCAR_018468 7 PCGACKFLRRKCMRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLAHLPVSDRSEAAVTIAYEALARIQDPIYGCVSHIFALQQQVVNLQVQLASL 104 7*************************89********************************************************************99 PP DUF260 98 kee 100 +e+ DCAR_018468 105 REQ 107 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.281 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTGTGSPCGA CKFLRRKCMR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLAHLPVSD 60 RSEAAVTIAY EALARIQDPI YGCVSHIFAL QQQVVNLQVQ LASLREQASQ SFGKGSGSSG 120 NPNYDTTANH GKFNPFDSPN DFQNWFQSEN ASMISPFDHR NSSRNIAADH FMVNPNSASG 180 HYENSAIPQH EDASFSSLED QGSTHTMDSV EDMQTSHCQW TFRDDLHDLQ SAALGYIHQY 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017252043.1 | 0.0 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9SLB6 | 5e-65 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A161XU03 | 0.0 | A0A161XU03_DAUCS; Uncharacterized protein | ||||
STRING | VIT_07s0005g03020.t01 | 8e-91 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-55 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018468 |
Publications ? help Back to Top | |||
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