PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018460
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 495aa    MW: 54561.5 Da    PI: 6.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018460genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-13348394455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  DCAR_018460 348 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 394
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-4249223IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.79E-15347398No hitNo description
SuperFamilySSF474596.02E-19347414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17348413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10348394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMGDKFWVKE EDKALVQGVV GVEAFEYLVW LATNNVFLEF AAPARDLGLQ TGLHKILEGS  60
NWSYAVFWQV CNTKSGKSAL IWGDGHCTKP AGDETEDRNS GGDSKKRVLD KLHACFKGPG  120
EHNLAVSMDS VSDLDMLYLT SMYYAFPFDK PSSPSQSFNS SRSLWGSDVK SSLEHYQSRS  180
FLAKMARFET VVFVPLKSGV VELGSSKVIP EDQNLIQMVK TLFGKSHAVR ANVSPKIFGQ  240
DLSLGAAKPG PISISFTPKV EEDLYYSADP PVLSANQVYG NSSNGHRNND NEVKFFPHMN  300
QVVTGELNPQ ALASAFEQGM DDSLLQGDDR KPRKRGRKPA NGRDEPLNHV EAERQRREKL  360
NQRFYALRAV VPNISKMDKA SLLGDAISYI TDLQSKIRIL ETEKGVVNNK QQQCVIPDID  420
FHTTQDNAVV RVSCPLDAHP VSRVLKTLRE LDVVTQDSNV STSDSGEVVH TFTIAAQGGT  480
AEDLKEKLST ALSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28342413273Transcription factor MYC2
5gnj_B2e-28342413273Transcription factor MYC2
5gnj_E2e-28342413273Transcription factor MYC2
5gnj_F2e-28342413273Transcription factor MYC2
5gnj_G2e-28342413273Transcription factor MYC2
5gnj_I2e-28342413273Transcription factor MYC2
5gnj_M2e-28342413273Transcription factor MYC2
5gnj_N2e-28342413273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329337RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248657.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A164Z2E80.0A0A164Z2E8_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000516720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-149bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]