PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26412.4 Da PI: 7.2134 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.5 | 2.1e-15 | 89 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+++AeIr+p + + r +lg++ +e+Aa a+++a+ ++g DCAR_018423 89 RYRGVRRRA-WGKYAAEIRHPIK---KgSRLWLGTYHNPEDAALAYDRAAYLIRG 139 8*****777.**********744...24**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-28 | 88 | 149 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 89 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 89 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 89 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-8 | 89 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-32 | 89 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 129 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSKQTNLSEY EISCLQSIEQ FLLNDNSEFS EEIISSHNSA AGSSCVEEYF MKDMQNLISE 60 EDGPNKRVEK DVKDTTSSSS TVVAAASKRY RGVRRRAWGK YAAEIRHPIK KGSRLWLGTY 120 HNPEDAALAY DRAAYLIRGS RATVNFPHLI RRSLFLDYAQ QINYKKPIKR VFHEPPPSHT 180 SPLASSSASS FILNNSSPLD QELSSLHDFS STSWSNDNGL LNDIILGAQA NKDQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 85 | 147 | 1 | 63 | ATERF1 |
3gcc_A | 2e-25 | 85 | 147 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251006.1 | 1e-175 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | A0A164Z1L2 | 1e-174 | A0A164Z1L2_DAUCS; Uncharacterized protein | ||||
STRING | XP_009798818.1 | 7e-37 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-19 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018423 |