PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018357
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 380aa    MW: 43220.1 Da    PI: 6.5002
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018357genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.4e-082264339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +  C+ +++  + l+C+ ++  lC +C  e H+       Ht+
  DCAR_018357 22 PSLCDFCGDSVAVLYCKADSAKLCLTCDREVHSTnqlftkHTR 64
                 678******99*********************66778888875 PP
2zf-B_box20.41.1e-0666109442
     zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 
                    C+e+e+ + ++fC + +  lC++C  e+H+      H+++pl
  DCAR_018357  66 VLCDECESSPSSIFCSTHCFVLCQNCDWESHRIsessnHDRRPL 109
                  68*****************************6588888988775 PP
3CCT59.98.5e-21335377143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ a++RYkeKrk+R++eK+irYesRK++Ae+R RvKGrF+k 
  DCAR_018357 335 RDIAITRYKEKRKSRRYEKHIRYESRKVRAETRARVKGRFAKI 377
                  7779*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-152067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5092067IPR000315B-box-type zinc finger
PfamPF006431.5E-62164IPR000315B-box-type zinc finger
CDDcd000217.32E-72464No hitNo description
PROSITE profilePS5011910.5863109IPR000315B-box-type zinc finger
CDDcd000216.29E-566109No hitNo description
PfamPF062031.4E-15335376IPR010402CCT domain
PROSITE profilePS5101714.594335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTSCSQVRDG KIQENSSNKE KPSLCDFCGD SVAVLYCKAD SAKLCLTCDR EVHSTNQLFT  60
KHTRSVLCDE CESSPSSIFC STHCFVLCQN CDWESHRISE SSNHDRRPLE GFNGCPSVVE  120
FLANFGFDDL GKKKSKRSEG VQESENFGFS DYLVWETPSV ISLDDLISSD GSDHNFQVTG  180
FPPLPKNRNT VCGQRKEEIL CQLRELAKLE PGIDQNKQDV EPSPGFQSLL PYDDFQHQNL  240
NFESKTEPTF FATYEGSTFQ WCNDIGKDPE KILPNASSQS YFNTDYQVPA KDPDIDPKLH  300
HIDNKNETPA QNIVVANASQ IFPKVAPHEF CSQHRDIAIT RYKEKRKSRR YEKHIRYESR  360
KVRAETRARV KGRFAKIDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249726.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A164Z0440.0A0A164Z044_DAUCS; Uncharacterized protein
STRINGVIT_07s0104g01360.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-74B-box type zinc finger protein with CCT domain