PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018196
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 308aa    MW: 34493.9 Da    PI: 6.5178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018196genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++ + G gtW+++++  g+ R++k+c++rw +yl
      DCAR_018196 13 KGAWTAEEDKILVDYISKNGHGTWRSVPKNAGLLRCGKSCRLRWTNYL 60
                     79******************************99************97 PP
2Myb_DNA-binding53.94e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+  +++++ +lG++ W++Ia+++  gRt++++k++w+++l
      DCAR_018196  66 RGPFTPEEENTIIRLHGELGNR-WASIASHLE-GRTDNEIKNFWNTHL 111
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.065860IPR017930Myb domain
SuperFamilySSF466892.7E-2910107IPR009057Homeodomain-like
SMARTSM007178.4E-131262IPR001005SANT/Myb domain
PfamPF002494.1E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-221467IPR009057Homeodomain-like
CDDcd001674.38E-101560No hitNo description
PROSITE profilePS5129426.34261115IPR017930Myb domain
SMARTSM007174.1E-1765113IPR001005SANT/Myb domain
PfamPF002492.8E-1666111IPR001005SANT/Myb domain
CDDcd001672.51E-1268111No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2768116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRLPCCEKG VKKGAWTAEE DKILVDYISK NGHGTWRSVP KNAGLLRCGK SCRLRWTNYL  60
RSDIKRGPFT PEEENTIIRL HGELGNRWAS IASHLEGRTD NEIKNFWNTH LRKKLNKTQN  120
TNLLTGQPSL SSSKKMDLKT ESPSTSHMVQ WESARVEAET RFSLSSSLAV PPPKVEHQSD  180
YFLKLWNSEV GESFRKIKKE PEMTFQQPKQ EMCSPSKVES VSVITTQAEG AGATLPLRDM  240
ADNGKEMQLI TPDNENDIVG SISSGSYELN SCSDAALDLL LDIPGGNYMD FLQEDNYDVS  300
LYLQSLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-241311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253215.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017253216.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017253217.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017253218.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017253219.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017253220.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A164YU010.0A0A164YU01_DAUCS; Uncharacterized protein
STRINGcassava4.1_026502m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-82myb domain protein 17