PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25917.2 Da PI: 4.8064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 3e-16 | 62 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++aa + l+g DCAR_018163 62 LYRGIR--SRKGKWVSEIRVPRT---KTRIWLGTYPTPEMAAAAYDAASLVLKG 110 69***6..557*********954...4*********************887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-9 | 61 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-17 | 61 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-25 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-17 | 62 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.6E-28 | 62 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 62 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAERDDHQKL RNYPSLSQHF EFECFELLSN NLEGEDYLQR QVLPLSPIIT TSIASSTHTH 60 PLYRGIRSRK GKWVSEIRVP RTKTRIWLGT YPTPEMAAAA YDAASLVLKG PHTALNFPTH 120 EYNNALLLTR GYSTAAVIRV AAANAAASRA VASESLELPA PQLAPQYFSN YVGSNGTDVL 180 GLKEEYVDEE EIFDMPNLLM DMAEGMLISP PMITIPPPSS DDSGQETLWN YTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251278.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A161YEC6 | 1e-172 | A0A161YEC6_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0003s12120.1 | 1e-42 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018163 |