PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018162
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 180aa    MW: 19735.3 Da    PI: 4.8479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018162genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-151765255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r  ++ g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++aa + l+g
  DCAR_018162 17 IYRGIR--SRCGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDAASLVLKG 65
                 69***5..779*********843...5*********************887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.45E-181675No hitNo description
PfamPF008471.5E-81664IPR001471AP2/ERF domain
SMARTSM003804.9E-281779IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-251774IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-171774IPR016177DNA-binding domain
PROSITE profilePS5103219.3091773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MPPPQAAVAS PSGKHPIYRG IRSRCGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDAAS  60
LVLKGPDTAL NFPNHMYSNL LLLPKEPRTA AWIRVAAANA AASRAVASPR QIAQDIDVDN  120
FSSDAYFLGA EEEYVDEEEL FNMPDLLMHM AEGMLVHPPS RISISPPISD NSEEESLWS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251842.11e-130PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ907e-41ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A162A3Z41e-128A0A162A3Z4_DAUCS; Uncharacterized protein
STRINGEOY230852e-45(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-31ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]