PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_018157

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 181aa MW: 19802.4 Da PI: 4.8004

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_018157	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	7.1e-17	8	57	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r +++g+WvAeIr+p++ ++r++lg++ t+e+Aa+a++aa + l+g DCAR_018157 8 PVYRGIR--SRSGKWVAEIREPRK---TTRIWLGTYPTPEMAAAAYDAASLVLKG 57 68**6..678*****843...5*******************887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-10	8	56	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.89E-18	9	66	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.796	9	65	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.2E-26	9	66	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-27	9	71	IPR001471	AP2/ERF domain
CDD	cd00018	6.54E-18	10	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSLWPRLPVY RGIRSRSGKW VAEIREPRKT TRIWLGTYPT PEMAAAAYDA ASLVLKGPET 60 ALNFPHHKYN NNLLLVPVQP TTAAGVREAA ANAAASLAVA SESTVALPAS QLARHGDCDV 120 NDNTSDNLVE MREEYQDDEE LFYMPNLLMA MAEGMLISPP RITISPPPSD NSDCLWSYSL 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-13	10	70	15	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251753.1	1e-131	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	9e-35	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A164YSD8	1e-129	A0A164YSD8_DAUCS; Uncharacterized protein
STRING	VIT_16s0100g00400.t01	7e-43	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-26	ERF family protein

Link Out ? help Back to Top
Phytozome	DCAR_018157

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]