PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 32760.9 Da PI: 4.7462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 5e-16 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k +Wv+e+r+p++ ++r++lg+f tae+Aa+a++ a ++l+g DCAR_018156 39 PVYRGVRSRK-LRKWVSEVREPKK---KTRIWLGTFPTAEMAARAHDVAVLALRG 89 68*****888.8*********854...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-10 | 39 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-30 | 40 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.443 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-28 | 40 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 40 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 41 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-29 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MNTMLSNYIE GTSDSPVMLA SSNPKKRGGR KKFRETRHPV YRGVRSRKLR KWVSEVREPK 60 KKTRIWLGTF PTAEMAARAH DVAVLALRGR SACLNFADSA WRLRIPTSTN ANEIQKAAAE 120 AAEAFRSTCQ DGEVVIEKEQ VALQDYLDEE VAEFGMPGQL IAEMAQGMML PPPDQYYCDG 180 DVEFCAGINK TPGKXNFADS AWRLRIPTST NANEIQKAAA EAAEAFRSTC QDGEVVIEKE 240 QVALQDYLDE EVAEFGMPGQ LIAEMAQGMM LPPPDQYYCD GDVEFCAGMS LWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 38 | 96 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251459.1 | 1e-131 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 8e-62 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A164YSB6 | 0.0 | A0A164YSB6_DAUCS; Uncharacterized protein | ||||
STRING | XP_008234474.1 | 8e-70 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-62 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018156 |
Publications ? help Back to Top | |||
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