PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 41104.1 Da PI: 5.6454 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.9 | 5.5e-55 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik++d+yk+ePwdL++ v +e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s DCAR_018104 8 VPPGFRFHPTDEELVDYYLRKKITSKRIDL-DVIKDIDLYKIEPWDLQElcglGV-EEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS 103 69****************************.9***************95454322.3567************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k lvg++ktLv+ykgrap+g+k+dW+mheyrle DCAR_018104 104 -KLDLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 137 .9999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.009 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDTSSHIVPP GFRFHPTDEE LVDYYLRKKI TSKRIDLDVI KDIDLYKIEP WDLQELCGLG 60 VEEQNEWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKA IYSKLDLVGM RKTLVYYKGR 120 APNGQKSDWI MHEYRLETDE NAPTQAKGWV VCRVFKKKIA AVRRMSEHES PIWYEDQVSF 180 MPDMDSPKQP NITYRYPYPC KKEQEFQYQN ISGSDHFFQL PHLENSKMLQ SPLPLIRSCN 240 YMPPYGLNVN LSRNIPQSSS IAQDEISYPS SYDQAVEQVT DWRVLDKFVA SQLSHEDVPQ 300 DNHEYLNVNA AALSSVVSAD DDNSSTLVRN LNSQEILDPE NTSNSISSCQ IDLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 8 | 158 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251562.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-127 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A162A1V6 | 0.0 | A0A162A1V6_DAUCS; Uncharacterized protein | ||||
STRING | EOY22909 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-117 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018104 |
Publications ? help Back to Top | |||
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