PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017924
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 301aa    MW: 33573.4 Da    PI: 7.365
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017924genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.43.1e-074879129
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.k 29
                 s y+GV++++++gr++A+++d  ++n  ++ k
  DCAR_017924 48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNkK 79
                 57*******************99997775534 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-1548128No hitNo description
SMARTSM003801.6E-1449132IPR001471AP2/ERF domain
PROSITE profilePS5103214.48649126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-849127IPR001471AP2/ERF domain
PRINTSPR003673.0E-65061IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-5101128IPR016177DNA-binding domain
PRINTSPR003673.0E-6108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKLSEQSPR STVTKSNTAT NTNGIHGVVK VKRTRKTVPR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGKAVDFLE EFRNTEELRA TQEEAAVAYD MAAIEYRGLN  120
AVTNFDLSRY IKWLRPDGNN STSAAANNLP DLKVETPHTL PNLIHHDHVK TNIVETKFLH  180
HQQPTQPSLV RVTDNNLMAL NTPPPAPVTA TSALGLLLQS SKFKEMMEMT TAAEYYPINS  240
SDSEPPRSCN FPEDIQTYFG SQDLSGYAGG DDFIFGDLNS IMQPLLHAGS SSSGTIDNYF  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250908.11e-150PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A162A1F10.0A0A162A1F1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1585533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-23ARIA-interacting double AP2 domain protein