PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017703
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 702aa    MW: 77236 Da    PI: 6.6993
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017703genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24115216199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ 
  DCAR_017703 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGD 208
                  89****************************996555555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  DCAR_017703 209 LCVGIRRA 216
                  9****997 PP
2Auxin_resp116.62.1e-38284367183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++ +FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  DCAR_017703 284 AATLAANGHPFEVVYYPRASTPEFCVKASQVKSAMQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMRWPDSPWRLLQ 367
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-38106220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-29109221IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-21114215No hitNo description
SMARTSM010193.5E-22115217IPR003340B3 DNA binding domain
PfamPF023624.3E-22115216IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225115217IPR003340B3 DNA binding domain
PfamPF065071.0E-33284367IPR010525Auxin response factor
PROSITE profilePS5174519.171615695IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MITFMDSNEN LREIEKCLDS QFWHACAGSM VQMPPVNSKV YYFPQGHFEH SCQNVDFVNR  60
VPPYVVCRVL SNRFMADPET DEVYANMRLV PVSGNEVNCD DDESLSDAQD KPTSFAKTLT  120
QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTILAKDV HGETWKFRHI YRGTPRRHLL  180
TTGWSTFVNQ KKLVAGDSIV FLRAENGDLC VGIRRAKRGI GGNPESTSGW NPAGGNCAVP  240
YGGFSAFLRD DENKLTRYGD GGSPCGSGSG MNKGKVRAES VIEAATLAAN GHPFEVVYYP  300
RASTPEFCVK ASQVKSAMQI RWCSGMRFKM PFETEDSSRI SWFMGTISSV QVADPMRWPD  360
SPWRLLQVTW DEPDLLHNVK SVSPWLVELV SNMPSIHISP LSPPRKKLRL PQHPDFPLDW  420
QLPVPTFSGN LLGHTSPFDH FSDITPAGMQ GARHTQYGLP LPEFHFNKLQ SGLFPPGFSP  480
FGHGCIPTRP SINPSFNKSR SSENISCLLS IGNSAHAAKK ADDQKPQQFL LFGQPILTKQ  540
QISVSSSGVT VSPVCAGNSS SEGDVDKVSN LSDGDGSASG SGFALRQHAI RERPSCEGHL  600
QYKGNPQEAD ANLEIGHCKV FMESEDVGRT LDLSLLSSYE ELCRKLATMF GIESSDMLNH  660
VLYRDIRGAV KHIGDESFSE FTKTARRLTI LTDASSNSIG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-781838851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249350.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A162A3320.0A0A162A332_DAUCS; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]