PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017673
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 273aa    MW: 31282.3 Da    PI: 8.1832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017673genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-123880246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +T +Ed ++  ++   G++ W+ Ia  ++ gRt++++k++w++
      DCAR_017673 38 GEFTDDEDRIICTLFSNIGSR-WSIIAGQLP-GRTDNDIKNYWNT 80
                     78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.902631IPR017877Myb-like domain
SuperFamilySSF466893.11E-211787IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-111743IPR009057Homeodomain-like
PROSITE profilePS5129421.3123286IPR017930Myb domain
SMARTSM007171.0E-103684IPR001005SANT/Myb domain
PfamPF002492.6E-103880IPR001005SANT/Myb domain
CDDcd001671.21E-73982No hitNo description
Gene3DG3DSA:1.10.10.602.5E-184483IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MRYYIWLECT FSIKRLRRCG KSCRLRWLNY LRPNIKHGEF TDDEDRIICT LFSNIGSRWS  60
IIAGQLPGRT DNDIKNYWNT KLKKKLLMGS LMLPNPFIRP PNHINYHQNP ILSSPTCSYS  120
SSLPPSLRYY TNNTCYNGTS NFTPNLVNPQ AQDQFLGPMQ NYQGKESGLI MFGGHDQQAA  180
SCSSSDGSNI TYNNKDQVDY EQLMMFSNGG INEIPDQKPM NLGMFGNHQS IGNTLDYNMS  240
SLEEIKQLIS TNNLTCNTNL NYFVDENKTM YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1988629108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2985082e-87AB298508.1 Daucus carota DcMYB4 mRNA for transcription factor DcMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250409.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A162A3110.0A0A162A311_DAUCS; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-54(Populus trichocarpa)
STRINGXP_010101625.11e-54(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-35myb domain protein 37