PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017636
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 475aa    MW: 54235.1 Da    PI: 6.4757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017636genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.8e-24118221186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                  +Wt+ +v++Li ++ +++++ + ++                 +kk++W++vsk+m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  DCAR_017636 118 KWTDGMVKLLIMMVFYIGDDQGVSEgndvagekkggggggalQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtSCKVVENQS 215
                  7************99887777765555888888999999999**********************************************669******* PP

     trihelix  81 yfdqle 86 
                  ++d ++
  DCAR_017636 216 LLDTMD 221
                  ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-21116247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEGNGMPNGM FSGINSGMLG LEMSPQQYQH LQAQQNPQNP QNPNLSQQHP HTHHTMVSFG  60
QNEVDHHHTQ NQQAVKQGYP YGAKPRTQQL TFSDDDEAGV GAEDSGGKRN ASPWQRMKWT  120
DGMVKLLIMM VFYIGDDQGV SEGNDVAGEK KGGGGGGALQ KKGKWKSVSK AMMERGFFVS  180
PQQCEDKFND LNKRYKRVND ILGKGTSCKV VENQSLLDTM DHLSPKMKEE VRKLLNSKHL  240
FFREMCAYHT SCNGGAQHSA EAGADSSHVQ QQQQQQQRRT CLHSSDNSPN VHNLGRTDTE  300
GSKMMKGVSV EEEDDDEDDN DDEDEDNDEV EGGARGHEHE SDLDVKITSH KRTRNETYAP  360
DSNSFQEFNN ELKYVIQDGT KSSWEKRQWM RIRLMQLEEH RMHHQCQAFE LEKQKMKWLK  420
FKHKKERDME AERLANERMR LQNERMVLIL RQKELELLDS QQQHQSCNRS SMAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249003.10.0PREDICTED: uncharacterized protein LOC108219919
TrEMBLA0A164YEB60.0A0A164YEB6_DAUCS; Uncharacterized protein
STRINGcassava4.1_006702m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-69sequence-specific DNA binding transcription factors