PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017509
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SRS
Protein Properties Length: 333aa    MW: 36619.1 Da    PI: 7.5244
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017509genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.46.6e-671192712154
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                  +sgt+sCqdCGnqakkdC ++RCRtCCks+gf+C+thvkstWvpaakrrerqq +   ss ++ + +++++++++ + ++ ++     + + a++++ 
  DCAR_017509 119 GSGTISCQDCGNQAKKDCIYMRCRTCCKSQGFQCQTHVKSTWVPAAKRRERQQVNILGSSPNSLQLQDQQHQNQQLSLMRGEAPKRPRENPLASHPSG 216
                  5799***********************************************999998888887777777777777666777777777778899999** PP

       DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  l+++ +P+ev+s+avfrcvrvssvd+ +e++aY+tav+igGhvfkG+LydqG+++
  DCAR_017509 217 LQVNAFPAEVNSPAVFRCVRVSSVDETDEQFAYHTAVNIGGHVFKGLLYDQGPQS 271
                  ****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-62122270IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-28124166IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.3E-25221269IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSGFFTLAGA GRDQEQEDQN NHNSSNNNNS LFLFRNDEIY DKNFELWQQS YQLNHQPKQP  60
HQLQQHVDLS LLGSSNRLDE QSLVYNSSDR ANNGNNNNNN RASGFGMMRP YGGGSSSSGS  120
GTISCQDCGN QAKKDCIYMR CRTCCKSQGF QCQTHVKSTW VPAAKRRERQ QVNILGSSPN  180
SLQLQDQQHQ NQQLSLMRGE APKRPRENPL ASHPSGLQVN AFPAEVNSPA VFRCVRVSSV  240
DETDEQFAYH TAVNIGGHVF KGLLYDQGPQ SSTHYGIASE SFPGAQQPLN LIASTGAATA  300
SNNPPAWTND SSVYPTPLNA FMAGTQFFPP PR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251520.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A161XRM90.0A0A161XRM9_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g13420.t011e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-64Lateral root primordium (LRP) protein-related