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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
DCAR_017498 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 325aa MW: 36200.2 Da PI: 9.9895 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_017498 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 383.6 | 3.1e-117 | 1 | 324 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyyepa.aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92
md++g+re r+k+ + + l +n+ +q+m+++aerda+i+ern+alsekk+a+aerdma lqrd+a+aern a+verdn++++l+++ens++
DCAR_017498 1 MDNSGHREngRHKPP---QgQWLMQNQpsMKQIMAIMAERDAAIQERNMALSEKKSAMAERDMAILQRDSAIAERNSAIVERDNAIATLQYRENSMSn 95
999999877777772...2222333321135****************************************************************999 PP
GAGA_bind 93 ...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekk.ak.kkkkksekskkkvkkes 182
s++p+g+++++g+k++++ qq+ + ++l++ a +r+++++ea p++ ++e ++k++k++++a+ +k++ + k+kk+se+ + ++ k +
DCAR_017498 96 gnmSTCPPGCHISRGVKHMHHPQQHVHdqSHLSEAASFgTRDMHTTEAIPTSPLVPEPAKSKQTKRTKKATPNKKTPrPSkKVKKESEDVNITKWKGG 193
99999*******************666566777765444*************9999999999988766665544433022144443333333333333 PP
GAGA_bind 183 ader..............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
+ + sk ++k++dl+ln+v +De+t+PvP+CsCtG+lr CYkWGnGGWqS+CCttt+S+yPLP ++++r+aRi+grKmS+gaf+
DCAR_017498 194 H--EmsggvndlnrelvvSKLDWKDQDLGLNQVPFDETTMPVPICSCTGVLRPCYKWGNGGWQSSCCTTTLSMYPLPCVPNKRHARIGGRKMSGGAFN 289
2..256999***************************************************************************************** PP
GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
klL +LaaeG+dlsnpvDL+dhWAkHGtn+++ti+
DCAR_017498 290 KLLTRLAAEGHDLSNPVDLRDHWAKHGTNRYITIK 324
**********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MDNSGHRENG RHKPPQGQWL MQNQPSMKQI MAIMAERDAA IQERNMALSE KKSAMAERDM 60
AILQRDSAIA ERNSAIVERD NAIATLQYRE NSMSNGNMST CPPGCHISRG VKHMHHPQQH 120
VHDQSHLSEA ASFGTRDMHT TEAIPTSPLV PEPAKSKQTK RTKKATPNKK TPRPSKKVKK 180
ESEDVNITKW KGGHEMSGGV NDLNRELVVS KLDWKDQDLG LNQVPFDETT MPVPICSCTG 240
VLRPCYKWGN GGWQSSCCTT TLSMYPLPCV PNKRHARIGG RKMSGGAFNK LLTRLAAEGH 300
DLSNPVDLRD HWAKHGTNRY ITIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
