PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_017238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 423aa MW: 47492.2 Da PI: 5.4489 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 324.3 | 2.4e-99 | 72 | 421 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 v+ L++ Ae++++++l+laqa+La l+++ +sp+g+p+qR+a+yf+eAL++ l++ ++lp +++ +n++++++a+++fs+vsPi+ f+++ta DCAR_017238 72 VDELIRLAECFETNSLQLAQAILAPLNHRlSSPNGKPLQRAAFYFKEALQSLLTG------NTLPDNSS--ENVVQTIKAYRTFSNVSPIPMFANFTA 161 678*************************99*************************......66655555..48************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 NqaIleaveg+ vH+iDfdi+ G+QW+++++++a +R+++pp +RiT+++++ + + e + + e+L +fA+el++ fe++++ ++++e l++++ + DCAR_017238 162 NQAILEAVEGAMIVHVIDFDIGFGGQWASFMREIAeNRKSNPPVIRITAIVPE--DYAMESRLMTENLCQFARELNIGFEIDFISVRTFEFLSFKSVK 257 ***********************************7899*************5..599999************************************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.eerikvErellg 291 + +gE++aV l+ ++r ++ ++++sP+vvv+v+ e + ++sF + ++e le+ys++f+sl +a+++ ++ +k+E +++ DCAR_017238 258 FAEGEKIAVLLSPTIFRRI---------GAGFVTDLRRISPHVVVHVDFEGSI-ASSFRQAVIEGLEFYSTVFESLeAANVGVCGgDWIRKIEMFVML 345 *************999998.........347*********************9.889*******************7778877667999********* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++i ++ ++g++ Wre + aGF++v ls++a qa++llr+v+++g++v ++++++vl+W+dr+Lv++SaWr DCAR_017238 346 PKIISAMEAAGRR-------ETPWREVFAGAGFRAVGLSQFADFQAECLLRRVQVRGFHVAKRQAEMVLCWHDRALVATSAWR 421 ***9999999987.......479***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.368 | 45 | 401 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-97 | 72 | 421 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 423 aa Download sequence Send to blast |
MRDLGLHDDN NSLHLSRSIP QDPILPPPQH LITDLPIPSY DQSSNFEFTN FHSSFATDQA 60 LMSQYNSEFD FVDELIRLAE CFETNSLQLA QAILAPLNHR LSSPNGKPLQ RAAFYFKEAL 120 QSLLTGNTLP DNSSENVVQT IKAYRTFSNV SPIPMFANFT ANQAILEAVE GAMIVHVIDF 180 DIGFGGQWAS FMREIAENRK SNPPVIRITA IVPEDYAMES RLMTENLCQF ARELNIGFEI 240 DFISVRTFEF LSFKSVKFAE GEKIAVLLSP TIFRRIGAGF VTDLRRISPH VVVHVDFEGS 300 IASSFRQAVI EGLEFYSTVF ESLEAANVGV CGGDWIRKIE MFVMLPKIIS AMEAAGRRET 360 PWREVFAGAG FRAVGLSQFA DFQAECLLRR VQVRGFHVAK RQAEMVLCWH DRALVATSAW 420 RF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-31 | 77 | 420 | 25 | 378 | Protein SCARECROW |
5b3h_A | 5e-31 | 77 | 420 | 24 | 377 | Protein SCARECROW |
5b3h_D | 5e-31 | 77 | 420 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ520159 | 0.0 | KJ520159.1 Daucus carota subsp. carota clone sca274297 anonymous marker DC11423 genomic sequence. | |||
GenBank | KJ520163 | 0.0 | KJ520163.1 Daucus carota subsp. carota clone sca390887 anonymous marker DC11423 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254092.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-134 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A164Y553 | 0.0 | A0A164Y553_DAUCS; Uncharacterized protein | ||||
STRING | XP_009803270.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8305 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-137 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_017238 |
Publications ? help Back to Top | |||
---|---|---|---|
|