PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_017227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24135.2 Da PI: 5.0564 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.2e-20 | 52 | 104 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F ++++++ e++ ++A++lgL+ rqV vWFqNrRa++k DCAR_017227 52 KRKLTDEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARWK 104 4589************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 7.2e-38 | 51 | 142 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE +F +e+kL++erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++d+ + e+++L++ev +L+++l+e DCAR_017227 51 RKRKLTDEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARWKSKKLEDEYTKLKNEHDNTVVEKCQLQNEVFKLKNQLSE 142 8***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.293 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 49 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.60E-16 | 51 | 107 | No hit | No description |
SuperFamily | SSF46689 | 1.41E-17 | 51 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-17 | 52 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 53 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.2E-5 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.2E-5 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSSSSLNDEM AILSQYYPDI YTQMTAEKGG EAKAQRRRKK SKGEGSCSMF RKRKLTDEQV 60 NMLELNFVNE HKLDSERKDR IASELGLDPR QVAVWFQNRR ARWKSKKLED EYTKLKNEHD 120 NTVVEKCQLQ NEVFKLKNQL SEAEKEMQQL AERLDGVSSN SPSSSFSMEV MDPPYLGEFG 180 MEGLENVLCM PDNYYGSNGL GIWADIYDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 53 | RRRKKSKGEGSCSMFRKRK |
2 | 37 | 53 | RKKSKGEGSCSMFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251314.1 | 1e-156 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 9e-70 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A161ZZT0 | 1e-154 | A0A161ZZT0_DAUCS; Uncharacterized protein | ||||
STRING | XP_009590483.1 | 4e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-68 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_017227 |
Publications ? help Back to Top | |||
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