PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017092

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 549aa MW: 60911.5 Da PI: 4.9966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017092	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	404.2	1.2e-123	179	547	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+e+L++cA+av+++dl+ a++l++rl ++s +g+p+qRl ay++e+L arl +s + k+++++e + sse l++++l++ev+P++kf++++a DCAR_017092 179 LKEVLVSCARAVADNDLSSADSLMSRLGPMVSVTGNPVQRLGAYMLEGLVARLGSSATPYHKSIRCKEPT---SSELLSYMHLLYEVCPYYKFGYMAA 273 5789***************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ e+ HiiDf+is+G QW +L+qa+++Rp+gpp++RiTgv++ +s + l +gerL+++Ae+++vpf+fn+ + ++ dl++++L DCAR_017092 274 NGAIAEAMKDENSFHIIDFQISEGSQWFTLIQAFSARPGGPPRIRITGVDDTTSAfyRGGGLDIVGERLSSLAESCRVPFKFNATTISN-FDLDFNTL 370 ***********************************************9988999**********************65555.5688 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ pgEalaVn++++lh+++d +++ +rd++L+ vk+l Pkvv+++eqea++n + F rfle+++yy+a+f+s+++ lpr+++eri E ++l+r DCAR_017092 371 EIIPGEALAVNFAYMLHHMPDGNGEKIYQRDKILSSVKNLCPKVVTLIEQEANTN-TCFIPRFLETFKYYMAVFESIDVMLPRDNQERIGAETHCLAR 467 *****************9999999*********************96.57************************************ PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivn++aceg++r+erhe lekWr+r+ +aGFkp pl++++++++k ll+++ + y++ee++g+l+lgW++++Lv+++aW DCAR_017092 468 DIVNLIACEGTDRVERHEILEKWRSRFVAAGFKPFPLNSYINATIKNLLKNYC-EHYTLEEREGALYLGWMEQNLVATCAW 547 ************************************************9.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.122	153	529	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-121	179	547	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MKGYSSMHST HEQQYIGQSS RVSEQPAHEF QSYLQKPCGT LDNQLFSADG SQQMQFPGKL 60 SQSFNTPEGA TSIGGHSGNS SFTVSYSATI SPISHADPHT YPSFTSDNTN NLQVGETSYS 120 SDFDTLKKKI KEIETLLLGP EPDISISNET YMYGGPSEIS STKEVSKQMI TGVSDDDDLK 180 EVLVSCARAV ADNDLSSADS LMSRLGPMVS VTGNPVQRLG AYMLEGLVAR LGSSATPYHK 240 SIRCKEPTSS ELLSYMHLLY EVCPYYKFGY MAANGAIAEA MKDENSFHII DFQISEGSQW 300 FTLIQAFSAR PGGPPRIRIT GVDDTTSAFY RGGGLDIVGE RLSSLAESCR VPFKFNATTI 360 SNFDLDFNTL EIIPGEALAV NFAYMLHHMP DGNGEKIYQR DKILSSVKNL CPKVVTLIEQ 420 EANTNTCFIP RFLETFKYYM AVFESIDVML PRDNQERIGA ETHCLARDIV NLIACEGTDR 480 VERHEILEKW RSRFVAAGFK PFPLNSYINA TIKNLLKNYC EHYTLEEREG ALYLGWMEQN 540 LVATCAWS*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MKGYSSMHST HEQQYIGQSS RVSEQPAHEF QSYLQKPCGT LDNQLFSADG SQQMQFPGKL  60
SQSFNTPEGA TSIGGHSGNS SFTVSYSATI SPISHADPHT YPSFTSDNTN NLQVGETSYS  120
SDFDTLKKKI KEIETLLLGP EPDISISNET YMYGGPSEIS STKEVSKQMI TGVSDDDDLK  180
EVLVSCARAV ADNDLSSADS LMSRLGPMVS VTGNPVQRLG AYMLEGLVAR LGSSATPYHK  240
SIRCKEPTSS ELLSYMHLLY EVCPYYKFGY MAANGAIAEA MKDENSFHII DFQISEGSQW  300
FTLIQAFSAR PGGPPRIRIT GVDDTTSAFY RGGGLDIVGE RLSSLAESCR VPFKFNATTI  360
SNFDLDFNTL EIIPGEALAV NFAYMLHHMP DGNGEKIYQR DKILSSVKNL CPKVVTLIEQ  420
EANTNTCFIP RFLETFKYYM AVFESIDVML PRDNQERIGA ETHCLARDIV NLIACEGTDR  480
VERHEILEKW RSRFVAAGFK PFPLNSYINA TIKNLLKNYC EHYTLEEREG ALYLGWMEQN  540
LVATCAWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-53	186	548	25	378	Protein SCARECROW
5b3h_D	5e-53	186	548	25	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250694.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A164Y1J8	0.0	A0A164Y1J8_DAUCS; Uncharacterized protein
STRING	VIT_12s0057g00560.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA681	24	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_017092

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]