PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33782.5 Da PI: 6.5099 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r r++lg+f taeeAa a+++a+++l+g DCAR_016997 29 EYRGVRQRT-WGKWVAEIREPMK---RNRIWLGSFSTAEEAAMAYDEAARRLYG 78 69****999.**********965...48************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.91E-32 | 28 | 88 | No hit | No description |
SMART | SM00380 | 3.3E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.26 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MENSRKVTVK SWKKGPARGK GGPLNSTCEY RGVRQRTWGK WVAEIREPMK RNRIWLGSFS 60 TAEEAAMAYD EAARRLYGPD THLNLPHLRS HFNPSNKSQK FKCFPSNKFI SLLPSSGLLN 120 LSAQPSVHVI HQRLEELKKN AAFPQSASSS SSSNDPRYEA SMVSGQFSSN YTGAKCKEVN 180 EVNFHADVLG NHREKPQLDL NEFLQQLGII REDDQPDTSE VSSSLTELES SLPDYDGLTP 240 NADTCFNWDM SSEVHQMQDH RDTSSEEHHM QDHQRGDLIN FQPYIPEELS CPSSIWNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017253530.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 3e-74 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A161ZZB0 | 0.0 | A0A161ZZB0_DAUCS; Uncharacterized protein | ||||
STRING | VIT_08s0007g08150.t01 | 1e-105 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7098 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016997 |
Publications ? help Back to Top | |||
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