PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 299aa    MW: 33782.5 Da    PI: 6.5099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016997genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-192978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p +   r r++lg+f taeeAa a+++a+++l+g
  DCAR_016997 29 EYRGVRQRT-WGKWVAEIREPMK---RNRIWLGSFSTAEEAAMAYDEAARRLYG 78
                 69****999.**********965...48************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.91E-322888No hitNo description
SMARTSM003803.3E-372992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-302987IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.262986IPR001471AP2/ERF domain
PfamPF008471.9E-122978IPR001471AP2/ERF domain
PRINTSPR003672.0E-103041IPR001471AP2/ERF domain
PRINTSPR003672.0E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENSRKVTVK SWKKGPARGK GGPLNSTCEY RGVRQRTWGK WVAEIREPMK RNRIWLGSFS  60
TAEEAAMAYD EAARRLYGPD THLNLPHLRS HFNPSNKSQK FKCFPSNKFI SLLPSSGLLN  120
LSAQPSVHVI HQRLEELKKN AAFPQSASSS SSSNDPRYEA SMVSGQFSSN YTGAKCKEVN  180
EVNFHADVLG NHREKPQLDL NEFLQQLGII REDDQPDTSE VSSSLTELES SLPDYDGLTP  240
NADTCFNWDM SSEVHQMQDH RDTSSEEHHM QDHQRGDLIN FQPYIPEELS CPSSIWNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253530.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-74DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A161ZZB00.0A0A161ZZB0_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g08150.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]