PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016952
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 286aa    MW: 32315.6 Da    PI: 6.0045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016952genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-142166148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+  ++++  +lG++ W++Ia++++  Rt++++k++w+++l
      DCAR_016952 21 RGNFTPHEEGMIIHLQSLLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 66
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.449115IPR017877Myb-like domain
SuperFamilySSF466893.98E-20272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-9227IPR009057Homeodomain-like
PROSITE profilePS5129422.8321670IPR017930Myb domain
SMARTSM007175.7E-132068IPR001005SANT/Myb domain
PfamPF002498.4E-132166IPR001005SANT/Myb domain
CDDcd001671.06E-82366No hitNo description
Gene3DG3DSA:1.10.10.604.7E-202867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRCSKSCRLR WTNYLRPGIK RGNFTPHEEG MIIHLQSLLG NKWAAIASYL PQRTDNDIKN  60
YWNTHLKKKV IKKLQNSGSS SDDQKLFSTP EKANHITDQA STTTSTLRLD HASNSSSSNS  120
NTVYASSTEN ISRLLQGWMR SSPTTKKMDA STHDDSSRTS IFGFRPKADE HKEYCTQDLI  180
SNEEFESILS LDNLNTGASN MASWDDHHYS DKADDHDDDN HDHDEVKHDN GELAKKVTDY  240
DHMSMNNPPP PPPPPLSFLE KWLLEEASTT AQTEDMMELP PIFST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1727040108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251441.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV72e-77MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A164XXS40.0A0A164XXS4_DAUCS; Uncharacterized protein
STRINGcassava4.1_031668m3e-80(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-57myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]