PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016859

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 376aa MW: 42059.2 Da PI: 7.3193

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016859	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl DCAR_016859 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-24	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-24	148	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MYHHQHYHAN NMQPTSRMSI TPERHLFLQG GHAAGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANN GANKIVATVA 120 PAGERMSDSP GPHISTSDQG PQTNKNLHIG DAIQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQTVLEK AQDTLGKQNL GTVGLEAAKV QLSELVSNVS TKSLDSAFSG MIEVPTFYPQ 240 QIQAKQPTDC SIQSCLTSYE VSQQGQEIQN RWSKDIKENR NFMSPIVQNT DKAYEMQLHA 300 SDLSMSVGVK EKMEERDIDA NLFYERTNPV KQEDRKSRQG FQISNSAPQL DLNIHDDSDA 360 ASNCKHFDLN GFSWS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MYHHQHYHAN NMQPTSRMSI TPERHLFLQG GHAAGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANN GANKIVATVA  120
PAGERMSDSP GPHISTSDQG PQTNKNLHIG DAIQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQTVLEK AQDTLGKQNL GTVGLEAAKV QLSELVSNVS TKSLDSAFSG MIEVPTFYPQ  240
QIQAKQPTDC SIQSCLTSYE VSQQGQEIQN RWSKDIKENR NFMSPIVQNT DKAYEMQLHA  300
SDLSMSVGVK EKMEERDIDA NLFYERTNPV KQEDRKSRQG FQISNSAPQL DLNIHDDSDA  360
ASNCKHFDLN GFSWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251270.1	0.0	PREDICTED: uncharacterized protein LOC108221925 isoform X1
Swissprot	Q9SQQ9	1e-121	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A164XUZ0	0.0	A0A164XUZ0_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_785.2	1e-163	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-123	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_016859

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]